Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq160 113 3e-20 seq150 96.9 2e-15 >seq160 Length=383029 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| |||| ||||||||||||||| ||||| ||||| | Sbjct 143053 ATGCAAATCTTTGTCAAAACTCTAACCGGCAAAACCATTACCTTGGAAGTCGAAGCGTCC 143112 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | || |||||| ||||| || || | ||| | |||| Sbjct 143113 GATACCATTGAAAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGACCAG 143172 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| ||||| || ||||| | || || | || |||||| Sbjct 143173 CAGAGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGACTACAAT 143232 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| ||||| ||||| ||| ||||| | ||| |||| || || Sbjct 143233 ATCCAGAAAGAATCAACTCTACATTTGGTACTTCGTCTACGTGGTGG 143279 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 21824 ATAGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAAC 21883 |||| ||| ||||| || ||| | || ||| | || ||||| ||||||||| ||||| Sbjct 142815 ATAGAGCACCATGCAGATTTTTGTAAAGACACTTACTGGCAAGACCATTACCTTGGAAGT 142874 Query 21884 GGAAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACC 21943 || || | || ||| | | | | ||| ||||| ||||| || || | || Sbjct 142875 AGAGGCGTCTGATACGATTGAGAACGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCC 142934 Query 21944 TGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGC 22003 | |||| |||||| | ||||||||||| ||||| || ||||| | || || | Sbjct 142935 ACCAGACCAGCAGAGATTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTC 142994 Query 22004 CGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| || ||||||||||| ||| | ||| |||| | ||| |||| || || Sbjct 142995 AGATTACAACATCCAGAAGGAATCCACTTTGCATTTGGTTCTTCGTCTACGTGGTGG 143051 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| | || |||||||| || || ||||| || || | Sbjct 143281 ATGCAGATCTTTGTCAAAACTCTCACCGGCAAAACAATCACACTGGAAGTCGAGGCGTCT 143340 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||| ||||| |||||||| || | ||| | |||| Sbjct 143341 GACACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGACCAG 143400 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| ||||| || ||||| | || || | |||||||| Sbjct 143401 CAGAGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTACAAC 143460 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| ||||| ||||| ||| ||||| | ||| |||| || || Sbjct 143461 ATACAGAAAGAATCAACTCTACATTTGGTACTTCGTCTACGTGGTGG 143507 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| |||| |||||||| || || ||||| || || | Sbjct 143509 ATGCAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCT 143568 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||| ||||| |||||||| || | ||| | | || Sbjct 143569 GACACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGATCAG 143628 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| |||||||| ||||| | || || | || |||||| Sbjct 143629 CAGAGGTTGATCTTTGCTGGTAAACAACTCGAAGACGGACGCACATTGTCAGACTACAAT 143688 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||||||| | ||| |||| | ||| |||| || || Sbjct 143689 ATCCAAAAGGAATCTACTTTACATTTGGTTCTTCGTCTACGTGGTGG 143735 Score = 86.0 bits (94), Expect = 4e-12 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| |||| |||||||| || || ||||| || || | Sbjct 143737 ATGCAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCC 143796 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | ||||| |||||| ||||| || || | ||| | | || Sbjct 143797 GACACAATTGAGAACGTTAAGGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAG 143856 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | ||||||||||| ||||| || ||||| | || || | || |||||| Sbjct 143857 CAAAGATTGATCTTTGCTGGTAAACAGCTCGAAGACGGACGCACATTGTCAGACTACAAT 143916 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||| ||| | ||| |||| | ||| | || || || Sbjct 143917 ATCCAAAAGGAATCNACTNTNCATTTGGTTCTTCGTNTNCGTGGNGG 143963 >seq150 Length=403005 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| | || || |||||||| || ||||| ||||| || Sbjct 341176 ATGCAGATCTTTGTAAAAACTCTTACTGGGAAAACCATCACTTTGGAAGTCGAAGCTTCA 341235 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| |||||| || ||||| || | ||| | || Sbjct 341236 GATACCATAGAAAATGTTAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 341295 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | | || ||||| || || |||||||||||| || ||| | |||||||||| Sbjct 341296 CAGCGTTTGATTTTTGCCGGTAAGCAACTAGAAGATGGAAGAACCCTTTCCGATTACAAC 341355 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||| ||||| || ||||| | || || || | ||||||||| Sbjct 341356 ATCCAGAAAGAATCCACACTTCACCTTGTTTTGCGCCTTCGAGGAGGA 341403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358096185380824