Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq160 129 5e-25 seq150 123 2e-23 seq239 98.7 8e-16 >seq160 Length=383029 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || ||||||| || |||||||| || || ||||| || Sbjct 143282 ATGCCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCT 143223 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || ||||| ||||| |||| | | ||| ||||| ||| Sbjct 143222 GACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGA 143163 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||| || ||| | | ||||| ||| |||| | |||| Sbjct 143162 GGAATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCG 143103 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | ||||||||||| |||||||| ||||| || |||||| Sbjct 143102 ACTTCCAAGGTAATGGTTTTGCCGGTTAGAGTTTTGACAAAGATTTGCATG 143052 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | ||| ||||||| |||||||| ||||| || ||||| || Sbjct 143738 ATGCCACCACGTAGACGAAGAACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCT 143679 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| |||||||||||||| |||| | | ||| || || ||| Sbjct 143678 GACAATGTGCGTCCGTCTTCGAGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGA 143619 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || || || || | | ||||| ||||| | | ||| Sbjct 143618 GGAATTCCTTCTTTATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCG 143559 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | ||||||||||| |||||||| ||||| ||||||||| Sbjct 143558 ACTTCCAATGTGATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCATG 143508 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || ||||||| || |||||||| || ||||||||||| Sbjct 143510 ATGCCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATCT 143451 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || ||||| ||||| |||| | | ||| ||||| ||| Sbjct 143450 GACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGA 143391 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || || || || | | ||||| ||||| | | ||| Sbjct 143390 GGAATTCCTTCTTTATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCG 143331 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | ||||||||||| |||||||| ||||| ||||||||| Sbjct 143330 ACTTCCAGTGTGATTGTTTTGCCGGTGAGAGTTTTGACAAAGATCTGCATG 143280 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| |||| || ||||||||| | || |||||||| || || ||||| || | Sbjct 144647 CCACCACGAAGTCGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGAC 144588 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || || || || || || || ||| |||| | | |||||||||||||||| Sbjct 144587 AGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGA 144528 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTG--TTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 || |||||||| || | | ||||| || | | |||| ||||| | | |||| Sbjct 144527 ATTCCTTCTTTATC--CTGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGA 144470 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 | |||| || | ||||||||||| || ||||| ||||| ||||||||| Sbjct 144469 CTTCCAATGTGATTGTTTTGCCGGTGAGGGTTTTGACAAAGATCTGCATG 144420 Score = 111 bits (122), Expect = 1e-19 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| | | | ||| ||||| | || ||||| ||||| || ||||| || Sbjct 143966 ATNCCNCCACGNANACGAAGAACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTCT 143907 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || ||||||||||| |||| | | || || || ||| Sbjct 143906 GACAATGTGCGTCCGTCTTCGAGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGA 143847 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTC 114331 ||||| ||||| || || ||| ||| | ||| | | |||| ||||||| | || Sbjct 143846 GGAATTCCTTCCTTATCCTGAAT-TTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTC 143788 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||| |||| || | ||||||||||| |||||||| ||||| ||||||||| Sbjct 143787 GACTTCCAATGTGATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCATG 143736 Score = 111 bits (122), Expect = 1e-19 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || ||||| |||||||| | |||||||| || || |||||||| || Sbjct 144194 ATACCTCCACGAAGCCTCAAGACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCC 144135 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || || || || || || || ||| |||| | | || || || ||| Sbjct 144134 GACAATGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGA 144075 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTC 114331 ||||| ||||| || || ||| ||| | ||| | | |||| ||||||| | || Sbjct 144074 GGAATTCCTTCCTTATCCTGAAT-TTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTC 144016 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| |||| || | ||||| ||||| |||||||| || || |||||||| Sbjct 144015 GACTTCCANTGTGATTGTTTTNCCGGTNAGAGTTTTGACNAAGATCTGCAT 143965 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | ||| ||||| | || ||||| || || ||||||||||| Sbjct 143054 ATGCCACCACGTAGACGAAGAACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCT 142995 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || ||||| ||||| |||| | | ||| ||||| || Sbjct 142994 GACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGT 142935 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || || || || | | |||| || || | | || Sbjct 142934 GGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTCTCAATCGTATCAGACGCCTCT 142875 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 || |||| ||| | || ||||| || || || ||||||||||||||||||| Sbjct 142874 ACTTCCAAGGTAATGGTCTTGCCAGTAAGTGTCTTTACAAAAATCTGCATGG 142823 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || ||||||| || |||||||| || |||||||| || Sbjct 144422 ATGCCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCC 144363 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || || || || || || || ||| |||| | | ||| || |||||| Sbjct 144362 GACAGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGA 144303 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTG--TTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 ||||| |||||||| || | | ||||| ||| | | || | |||||| | | || Sbjct 144302 GGAATTCCTTCTTTATC--CTGTATTTTGGCTTTGACATTCTCGATGGTGTCCGACGCTT 144245 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| |||| || | ||||| || || || || || || || || ||||| Sbjct 144244 CGACCTCCAGAGTGATGGTTTTACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 >seq150 Length=403005 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | |||||| | || | || |||||||| || |||||||||||| Sbjct 341405 ATTCCTCCTCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCG 341346 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | |||||| ||||| ||||| || | || | |||||| || || ||| Sbjct 341345 GAAAGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGA 341286 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||||||||| ||| ||| | ||| | | ||| | ||| || | | ||| Sbjct 341285 GGAATTCCTTCTTTGTCCTGAAT-TTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTC 341227 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||| |||| || | ||||| || || |||||||||||||| ||||||||| Sbjct 341226 GACTTCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCATG 341175 Score = 122 bits (134), Expect = 7e-23 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || ||||||||||||||||||| || |||||||| || ||||||||||| Sbjct 342049 ACCTCCCCGAAGTCTCAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGA 341990 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| | |||||| | ||||||||||| |||| ||||| ||||| || ||||| Sbjct 341989 AAGAGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGG 341930 Query 114275 AATGCCTTCTTTGTC 114289 ||||||||||||||| Sbjct 341929 AATGCCTTCTTTGTC 341915 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 114201 ATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGC 114260 |||||||||||| | || | |||||| | ||||||||||| |||| ||||| Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526 Query 114261 TGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTG 114320 ||||| || |||||||||||||||||||| || || ||||| | ||| | ||| Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTG 341466 Query 114321 TCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 114380 || | || ||||| || | ||| | ||||| || || |||||||| || || || ||| Sbjct 341465 TCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGC 341406 Query 114381 AT 114382 || Sbjct 341405 AT 341404 >seq239 Length=229837 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||| || || ||||| || | |||||| ||| || || || || || ||| ||| Sbjct 6124 CTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGA 6183 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 |||||||||| || ||||| || || || || ||||| |||||| || | | || Sbjct 6184 TGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTTT 6243 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 ||| ||||||| || ||| || || | ||| | || || || || |||||||| || | Sbjct 6244 CAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACGA 6303 Query 114373 AAATCTGCATGG 114384 | |||||||||| Sbjct 6304 ATATCTGCATGG 6315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420100830736272