Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq880 104 2e-17 seq885 98.7 8e-16 seq2321 95.1 1e-14 seq2106 95.1 1e-14 seq1389 91.5 1e-13 seq901 91.5 1e-13 seq1867 89.7 4e-13 seq150 89.7 4e-13 >seq880 Length=49736 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 43597 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 43656 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || |||||| Sbjct 43657 CCATAACTGATTTAATGAGCCATTCGCGGTTTCATCTTAA 43696 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 43597 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 43656 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || |||||| Sbjct 43657 CCATAACTGATTTAATGAGCCATTCGCGGTTTCATCTTAA 43696 >seq885 Length=44800 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/100 (84%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 38842 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 38901 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 38902 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 38941 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/100 (84%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 38842 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 38901 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 38902 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 38941 >seq2321 Length=22588 Score = 95.1 bits (104), Expect = 1e-14 Identities = 83/100 (83%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATTG-CTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| ||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 20865 CATGTATTAACTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 20924 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 20925 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 20964 Score = 95.1 bits (104), Expect = 1e-14 Identities = 83/100 (83%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATTG-CTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| ||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 20865 CATGTATTAACTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 20924 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 20925 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 20964 >seq2106 Length=19525 Score = 95.1 bits (104), Expect = 1e-14 Identities = 83/100 (83%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||| | ||||||||||||| || | || |||||| ||| Sbjct 7849 CATGTATTAGCTCTAGAATTACCCCAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 7790 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 7789 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 7750 Score = 95.1 bits (104), Expect = 1e-14 Identities = 83/100 (83%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||| | ||||||||||||| || | || |||||| ||| Sbjct 7849 CATGTATTAGCTCTAGAATTACCCCAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 7790 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 7789 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 7750 >seq1389 Length=39678 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/100 (83%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| |||| |||||||| || | || |||||| ||| Sbjct 29736 CATGTATTAGCTCTAGAATTACCACAGTTA-CCAAGTAAATGTGGGTACAATCTAATGAA 29678 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 29677 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 29638 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/100 (83%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| |||| |||||||| || | || |||||| ||| Sbjct 29736 CATGTATTAGCTCTAGAATTACCACAGTTA-CCAAGTAAATGTGGGTACAATCTAATGAA 29678 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 29677 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 29638 >seq901 Length=49467 Score = 91.5 bits (100), Expect = 1e-13 Identities = 78/93 (84%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 26346 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 26287 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 ||| || |||| || ||||||||||| ||| || Sbjct 26286 CCATAATTGATTTAATGAGCCATTCGCGGTTTC 26254 Score = 91.5 bits (100), Expect = 1e-13 Identities = 78/93 (84%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 26346 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 26287 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 ||| || |||| || ||||||||||| ||| || Sbjct 26286 CCATAATTGATTTAATGAGCCATTCGCGGTTTC 26254 >seq1867 Length=22164 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/100 (82%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| ||| |||||||||||| ||||| ||||||| || | || |||||| ||| Sbjct 15805 CATGTATTAGCTTTAGAATTACCACAGTTATTCAAGTAAATGTGGGTACAATCTAATGAA 15864 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 15865 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 15904 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/100 (82%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| ||| |||||||||||| ||||| ||||||| || | || |||||| ||| Sbjct 15805 CATGTATTAGCTTTAGAATTACCACAGTTATTCAAGTAAATGTGGGTACAATCTAATGAA 15864 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 15865 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 15904 >seq150 Length=403005 Score = 89.7 bits (98), Expect = 4e-13 Identities = 166/244 (68%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||| || |||| || || ||||| ||| || ||||| ||||||||||| | Sbjct 341402 CCTCCTCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAA 341343 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | |||||| |||||||| |||| ||||||||||| || Sbjct 341342 AGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGA 341283 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | | ||||||||| |||||| ||||| | |||| | || |||| | Sbjct 341282 ATTCCTTCTTTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACT 341223 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAATATGTGA 34140 || | || || ||||| || || || ||||| |||||||| ||||| | ||| | || Sbjct 341222 TCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCATGATGAATCTAAGA 341163 Query 34141 CAAA 34144 |||| Sbjct 341162 CAAA 341159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397030674217912