Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq160 147 5e-30 seq150 132 1e-25 seq239 123 6e-23 >seq160 Length=383029 Score = 147 bits (162), Expect = 5e-30 Identities = 175/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | |||||| | ||| | || |||||| |||||||| |||| Sbjct 143283 CATG-CCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGT 143225 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | | |||||||||||||| | |||||||| || ||||||| | ||| || | Sbjct 143224 CTGACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTG---GT 143168 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || || |||||||| |||||||| ||||| ||||| |||||||| || | |||| || Sbjct 143167 CTGGAGGAATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTTTCAATGGTATCGGACG 143108 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||| | || || || || ||||| ||||| ||||| || || ||||| Sbjct 143107 CTTCGACTTCCAAGGTAATGGTTTTGCCGGTTAGAGTTTTGACAAAGATTTGCAT 143053 Score = 141 bits (156), Expect = 2e-28 Identities = 174/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || | ||| | || ||| ||||||||||| |||| Sbjct 143739 CATG-CCACCACGTAGACGAAGAACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGT 143681 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | | |||||||||||||| | |||||| || || ||||||| | ||| ||| | Sbjct 143680 CTGACAATGTGCGTCCGTCTTCGAGTTGTTTACCAGCAAAGATCAACCTCTGCTGA---T 143624 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||| |||||||||||||| |||||||| || || |||||||| || | || || Sbjct 143623 CTGGAGGAATTCCTTCTTTATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACG 143564 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | ||||| || || ||||| ||||| ||||| || |||||||| Sbjct 143563 CCTCGACTTCCAATGTGATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143509 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | |||||| | ||| | || |||||| ||||| || |||| Sbjct 144423 CATG-CCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGT 144365 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||||||||| || | || ||||| |||||||||| | ||| ||| Sbjct 144364 CCGACAGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCG 144305 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || ||||||||||||||||| ||||| ||||| || || || || | || || || Sbjct 144304 GAGGAATTCCTTCTTTATCCTGTATTTTGGCTTTGACATTCTCGATGGTGTCCGACGCTT 144245 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| || || || || || |||||||||||||| ||||| Sbjct 144244 CGACCTCCAGAGTGATGGTTTTACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 Score = 136 bits (150), Expect = 9e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || |||| || || | ||| | ||| |||||| || ||||| ||||| | Sbjct 144648 TCCACCACGAAGTCGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGA 144589 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||||||||| || | || ||||| |||||||||| | |||||| || Sbjct 144588 CAGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGG 144529 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||||||||||| ||||| || || ||||| || |||| || || || || Sbjct 144528 AATTCCTTCTTTATCCTGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGAC 144469 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | ||||| || || ||||| || || ||||| || |||||||| Sbjct 144468 TTCCAATGTGATTGTTTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 144421 Score = 132 bits (146), Expect = 1e-25 Identities = 172/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | |||||| | ||| | || |||||| || || || || | Sbjct 143511 CATG-CCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAAT 143453 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | | |||||||||||||| | |||||||| || ||||||| | ||| || | Sbjct 143452 CTGACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGG---T 143396 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||| |||||||||||||| |||||||| || || |||||||| || | || || Sbjct 143395 CTGGAGGAATTCCTTCTTTATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACG 143336 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| || || ||||| ||||| ||||| || |||||||| Sbjct 143335 CCTCGACTTCCAGTGTGATTGTTTTGCCGGTGAGAGTTTTGACAAAGATCTGCAT 143281 Score = 123 bits (136), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || | | ||| || | ||| | || ||| ||||||||||| ||||| | Sbjct 143963 CCNCCACGNANACGAAGAACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTCTGAC 143904 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 | |||||||||||||| | ||||| || || ||||||| | || || |||| Sbjct 143903 AATGTGCGTCCGTCTTCGAGCTGTTTACCAGCAAAGATCAATCTTTGCTG---ATCTGGA 143847 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| |||||||| ||||| || || ||||| || || | ||| || || Sbjct 143846 GGAATTCCTTCCTTATCCTGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCG 143787 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| || || ||||| ||||| ||||| || |||||||| Sbjct 143786 ACTTCCAATGTGATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143737 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || | ||| | ||| ||| || ||||| || || | Sbjct 143055 CATG-CCACCACGTAGACGAAGAACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAAT 142997 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | | |||||||||||||| | |||||||| || ||||||| | ||| || Sbjct 142996 CTGACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTG 142937 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| |||||||| ||||| |||||||| || || ||||| || || | ||| || | Sbjct 142936 GTGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTCTCAATCGTATCAGACGCCT 142877 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| | || || ||||| || || || ||||| || || |||||||| Sbjct 142876 CTACTTCCAAGGTAATGGTCTTGCCAGTAAGTGTCTTTACAAAAATCTGCAT 142825 Score = 118 bits (130), Expect = 3e-21 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | | ||||||||||| || | || ||||| ||||| Sbjct 144156 TTCCTTCTGGATGTTGTAGTCCGACAATGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 144097 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | || || |||| || |||||||| |||||||| ||||| || || || Sbjct 144096 GATCAATCTTTGCTG---ATCTGGAGGAATTCCTTCCTTATCCTGAATTTTGGCCTTAAC 144040 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | ||| || || ||||| | ||||| || || ||||| ||||| || Sbjct 144039 GTTCTCAATTGTGTCGGACGCCTCGACTTCCANTGTGATTGTTTTNCCGGTNAGAGTTTT 143980 Query 288459 GACGAATATCTGCAT 288473 ||| || |||||||| Sbjct 143979 GACNAAGATCTGCAT 143965 >seq150 Length=403005 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || || |||| ||| |||||| ||||| || || |||| || || | ||| |||||| Sbjct 341384 ACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAAAGGGTTCTTCCATCTTCT 341325 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | ||| || || || || |||| |||||| ||| | || ||||||||||| ||||| Sbjct 341324 AGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGA 341265 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 ||||| || || || |||||||| | ||| | ||| ||||| | ||||| || ||| Sbjct 341264 ATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACTTCCAAAGTGATGGTTTTC 341205 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || ||||| || || || |||||||| ||| Sbjct 341204 CCAGTAAGAGTTTTTACAAAGATCTGCATGATG 341172 >seq239 Length=229837 Score = 123 bits (136), Expect = 6e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| |||||||| ||||| | ||| || ||||| || || | || || || ||||||| Sbjct 6124 CTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGA 6183 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | |||||||| ||| |||||| || || || || || || || || ||||| |||| Sbjct 6184 TGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTTT 6243 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | |||| ||| | ||| || || || || || ||||| || || ||||| || |||| Sbjct 6244 CAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACGA 6303 Query 288464 ATATCTGCATTATGTT 288479 |||||||||| |||| Sbjct 6304 ATATCTGCATGGTGTT 6319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179555310504968