Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq207 102 9e-17 seq182 100 3e-16 seq160 98.7 1e-15 seq95 96.9 4e-15 seq221 95.1 1e-14 seq59 95.1 1e-14 seq57 86.0 7e-12 >seq207 Length=283148 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || ||||| | ||||| |||| | |||||||||| ||||||||||||||||||||| | Sbjct 45000 ATAAAAAAATCTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 45059 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| ||||||||||||||||||| Sbjct 45060 TACTAACCACTATACTACCGAGGA 45083 >seq182 Length=331840 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATTT-TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| ||||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 188278 AAAAATTAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 188337 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||||||||||| Sbjct 188338 CTAACCACTATACTACCGAGGA 188359 Score = 100 bits (110), Expect = 3e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 188935 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 188994 Query 57058 TCACCACTATACTACCGAGGATT 57080 | ||||||||||||||||||||| Sbjct 188995 TGACCACTATACTACCGAGGATT 189017 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| | ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 188813 AAAAGATGTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 188754 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 188753 TAACCACTATACTACCGAGGA 188733 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 188135 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 188076 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 188075 TACTACCGAGGA 188064 >seq160 Length=383029 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || | || ||| | ||||||||||| ||| ||||| || || |||||||| | | Sbjct 143051 CCACCACGTAGACGAAGAACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCTGAC 142992 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || |||| || ||||| || ||||| || || | || ||||||||| | ||| Sbjct 142991 AATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGA 142932 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||| || |||||| |||| || | | ||| || || || || Sbjct 142931 ATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTCTCAATCGTATCAGACGCCTCTACT 142872 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || ||||| ||||| || || ||||||||||| || ||||| Sbjct 142871 TCCAAGGTAATGGTCTTGCCAGTAAGTGTCTTTACAAAAATCTGCAT 142825 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || | || ||| | |||||||| | || || || || |||||||| || | | Sbjct 143279 CCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGAC 143220 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || |||| || ||||| || ||||| || || | | ||||||||| | || Sbjct 143219 AATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 143160 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||| ||| ||| |||| | ||||| | | | || ||| || ||| || Sbjct 143159 ATTCCTTCCTTATCC-TGAATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGAC 143101 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || ||||||||||| ||||| || || |||||||||||||| Sbjct 143100 TTCCAAGGTAATGGTTTTGCCGGTTAGAGTTTTGACAAAGATTTGCAT 143053 >seq95 Length=602240 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 387947 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 387888 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 387887 TACTACCGAGGAT 387875 >seq221 Length=261193 Score = 95.1 bits (104), Expect = 1e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 214304 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 214245 Query 57067 TACTACCGAGGA-TTGA 57082 |||||||||||| |||| Sbjct 214244 TACTACCGAGGACTTGA 214228 >seq59 Length=817271 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 17200 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 17141 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 17140 TACTACCGAGGA 17129 >seq57 Length=840021 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 429252 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 429193 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 429192 TACTATCGAGGA 429181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543168283711040