Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq160 132 5e-26 seq150 125 7e-24 seq239 91.5 1e-13 seq144 82.4 8e-11 seq60 82.4 8e-11 >seq160 Length=383029 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | || |||||||| || ||||||||||||| | ||||| |||| Sbjct 143493 AAGTACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATCTGACAATGTGCGTCCGTC 143434 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||| || || ||| | || | || ||||||||| ||||||||||||||||| || Sbjct 143433 TTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTATC 143374 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| ||||| ||| || || | ||| ||| || || ||||| | || | || Sbjct 143373 TTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGATTGT 143314 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | |||||| || || || ||||| Sbjct 143313 TTTGCCGGTGAGAGTTTTGACAAAGATCTGCAT 143281 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | || ||||| || || ||||||||||||| | ||||| |||| Sbjct 143037 AAGAACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGTCCGTC 142978 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||| || || ||| | || | | ||||||||| || ||||||||||| || || Sbjct 142977 TTCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCTTCCTTATC 142918 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| ||||| ||| || ||| | |||||| || || ||||| | || | ||| Sbjct 142917 TTGGATTTTAGCCTTGACGTTCTCAATCGTATCAGACGCCTCTACTTCCAAGGTAATGGT 142858 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | || ||||| ||||| ||||| Sbjct 142857 CTTGCCAGTAAGTGTCTTTACAAAAATCTGCAT 142825 Score = 118 bits (130), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | || |||||||| || || ||||| |||| | ||||| |||| Sbjct 143265 AAGTACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGACAATGTGCGTCCGTC 143206 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||| || || ||| | || | || ||||||||| |||||||||||||| || || Sbjct 143205 TTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATC 143146 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | |||| ||||| || || | ||||| || || ||||| | || | || Sbjct 143145 CTG-AATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGACTTCCAAGGTAATGG 143087 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | |||||||| | |||||| || || |||||||| Sbjct 143086 TTTTGCCGGTTAGAGTTTTGACAAAGATTTGCAT 143053 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | || ||||| ||||| || ||||| |||| | ||||| |||| Sbjct 143721 AAGAACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTC 143662 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || || || || ||| | || | || |||||| || ||||||||||||||||| || Sbjct 143661 TTCGAGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTATC 143602 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| ||||| ||| || || | ||| ||| || || ||||| | || | || Sbjct 143601 TTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAATGTGATTGT 143542 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | |||||| || || || ||||| Sbjct 143541 TTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143509 Score = 111 bits (122), Expect = 2e-19 Identities = 157/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCG--CG 64288 ||| || | ||| | || |||||||| || |||||||| || |||| ||| ||| || Sbjct 144405 AAGTACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTC--CGACAGTGTGCGTCCG 144348 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || || |||||||| ||||| | || | | |||||| || ||||||||||||||||| Sbjct 144347 TCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTTA 144288 Query 64349 TCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || |||| |||| ||||| ||| ||| | || || || || || || | ||| | Sbjct 144287 TCCTGTA-TTTTGGCTTTGACATTCTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGAT 144229 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || || | || || ||||| |||||||| Sbjct 144228 GGTTTTACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 Score = 111 bits (122), Expect = 2e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCG--CGT 64289 || |||| ||| | || |||||||| || || ||||| || |||| ||| ||| ||| Sbjct 144632 AGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTC--CGACAGTGTGCGTCCGT 144575 Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 | || |||||||| ||||| | || | | ||| ||||| ||||||||||||||||| | Sbjct 144574 CCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGAATTCCTTCTTTAT 144515 Query 64350 CTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 | |||||||| ||| || ||| | || ||| || || ||||| | || | | Sbjct 144514 CCTGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGACTTCCAATGTGATTG 144455 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | |||||||| | ||||| || || || ||||| Sbjct 144454 TTTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 144421 Score = 104 bits (114), Expect = 2e-17 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | | ||| || | ||| | || ||||| ||||| || ||||| |||| Sbjct 143963 CCNCCACGNANACGAAGAACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTCTGAC 143904 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| ||||||| ||||| || || ||| | || | | ||||| || |||||| Sbjct 143903 AATGTGCGTCCGTCTTCGAGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGA 143844 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || || || ||||| ||| || ||| | ||| || || || ||| Sbjct 143843 ATTCCTTCCTTATCCTGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACT 143784 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || |||||||| | |||||| || || || ||||| Sbjct 143783 TCCAATGTGATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143737 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || ||||| || || |||||||| || | | ||||| |||| || Sbjct 144173 ACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGTCCGTCCTCG 144114 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 |||||||| ||||| | || | | ||||| || |||||||||||||| || || || Sbjct 144113 AGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGA 144054 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| ||| || ||| | ||| || || || ||||| | || | || || Sbjct 144053 ATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCANTGTGATTGTTTTN 143994 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| | |||||| || || || ||||| Sbjct 143993 CCGGTNAGAGTTTTGACNAAGATCTGCAT 143965 >seq150 Length=403005 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || || |||| || |||||||| || ||||||||||| | | ||| | | ||||| Sbjct 341384 ACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAAAGGGTTCTTCCATCTTCT 341325 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || ||||| |||||| |||| | |||||||| || ||||||||||||||||| || || Sbjct 341324 AGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGA 341265 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| ||| ||| || | ||||| || || ||||| | ||| | ||| || Sbjct 341264 ATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACTTCCAAAGTGATGGTTTTC 341205 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | ||||||||| || || ||||| Sbjct 341204 CCAGTAAGAGTTTTTACAAAGATCTGCAT 341176 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 64262 ATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGC 64321 ||||||||||| | | ||| | | ||||| | ||| || || ||| | || || || Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526 Query 64322 TGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTA 64381 || || ||||||||||| |||||||| ||||| ||||| |||||| || | || Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTG 341466 Query 64382 TCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGC 64441 || ||| || ||||| | || | ||| || || || | |||||| ||||| |||||| Sbjct 341465 TCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGC 341406 Query 64442 ATT 64444 ||| Sbjct 341405 ATT 341403 >seq239 Length=229837 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||| || || ||||| || | || || || | || || |||||||||||||| | | Sbjct 6124 CTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGA 6183 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 |||| |||||||| || || || || || || || ||||| || || ||| ||| | Sbjct 6184 TGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTTT 6243 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | || || ||| ||||| || | || | |||||| || || | |||||| |||| Sbjct 6244 CAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACGA 6303 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 6304 ATATCTGCAT 6313 >seq144 Length=417326 Score = 82.4 bits (90), Expect = 8e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 154047 ACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATT 154106 ||||| | | ||| | |||||| ||| | ||||||| || ||||| || ||||| || Sbjct 5762 ACGCGTCTAATATAGATATTGCTTGTGTAAGGCTCGATGGACTCGTTATTTCCTAAAATC 5821 Query 154107 TGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTT 154166 || || || | || || ||||| || | ||| | || |||| | |||||| || Sbjct 5822 TGCGCCGTGGAGGCCGTAGGCATGGGAGCTATCAAAAGCGAATTTCTGACACCGTGCTTC 5881 Query 154167 GCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCACATG 154226 || || || || || ||||||||||||| || || |||| |||| |||||| Sbjct 5882 GCGATTTTTGCCTTCAATTCGTCCCAATTCCACAAATTTGTCGGTTTTACGTCCCACATA 5941 Query 154227 TCGTATTG 154234 |||||||| Sbjct 5942 TCGTATTG 5949 >seq60 Length=814933 Score = 82.4 bits (90), Expect = 8e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 154047 ACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATT 154106 ||||| | | ||| | |||||| ||| | ||||||| || ||||| || ||||| || Sbjct 811637 ACGCGTCTAATATAGATATTGCTTGTGTAAGGCTCGATGGACTCGTTATTTCCTAAAATC 811696 Query 154107 TGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTT 154166 || || || | || || ||||| || | ||| | || |||| | |||||| || Sbjct 811697 TGCGCCGTGGAGGCCGTAGGCATGGGAGCTATCAAAAGCGAATTTCTGACACCGTGCTTC 811756 Query 154167 GCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCACATG 154226 || || || || || ||||||||||||| || || |||| |||| |||||| Sbjct 811757 GCGATTTTTGCCTTCAATTCGTCCCAATTCCACAAATTTGTCGGTTTTACGTCCCACATA 811816 Query 154227 TCGTATTG 154234 |||||||| Sbjct 811817 TCGTATTG 811824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499603854108640