Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq160 111 2e-19 seq150 95.1 1e-14 seq222 86.0 6e-12 >seq160 Length=383029 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| ||||||| | || |||||||| || |||||||| Sbjct 143736 GCCACCACGTAGACGAAGAACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCTGA 143677 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| |||||||||||||| | | |||| | | ||| || || ||||| Sbjct 143676 CAATGTGCGTCCGTCTTCGAGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGG 143617 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || |||||| || | | ||| | ||||| | || ||| || Sbjct 143616 AATTCCTTCTTTATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGAC 143557 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||| || || |||||||| ||||| ||||||||| Sbjct 143556 TTCCAATGTGATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCATG 143508 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| ||||||||| | | || || || || || |||||||| || || || | Sbjct 144635 CGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGACAGTGTGCGTCCG 144576 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 |||||||| || || |||| |||| | | ||||||||||||||| || |||||||| Sbjct 144575 TCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGAATTCCTTCTTTA 144516 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||||| || | | || | ||||| | || ||| || || | || | Sbjct 144515 TCCTGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGACTTCCAATGTGATT 144456 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| || || || ||||| ||||| ||||||||| Sbjct 144455 GTTTTGCCGGTGAGGGTTTTGACAAAGATCTGCATG 144420 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| |||||||| | | || ||||| || ||||||||||| || || || ||| Sbjct 144177 CAAGACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGTCCGTC 144118 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 |||||| || || |||| |||| | | || || || ||||| || ||||| || || Sbjct 144117 CTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATC 144058 Query 138522 GGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 ||| |||| | |||| | || | ||||||| || ||| || || | || | | Sbjct 144057 -CTGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCANTGTGATTG 143999 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || || |||||||| || || |||||||| Sbjct 143998 TTTTNCCGGTNAGAGTTTTGACNAAGATCTGCAT 143965 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || ||||||| |||| || || || ||||||||||| Sbjct 144420 GCCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGA 144361 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||||||| || || |||| |||| | | ||| || |||||||| Sbjct 144360 CAGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGG 144301 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||||| ||| | | || | |||||| | || || || Sbjct 144300 AATTCCTTCTTTATCCTGTATTTTGGCTTTGACATTCTCGATGGTGTCCGACGCTTCGAC 144241 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | |||||||| || || || || || || || ||||| Sbjct 144240 CTCCAGAGTGATGGTTTTACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 Score = 84.2 bits (92), Expect = 2e-11 Identities = 165/242 (68%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| ||||| | | || ||||| || |||||||| || Sbjct 143052 GCCACCACGTAGACGAAGAACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCTGA 142993 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| ||||| ||||| || | | |||| | | ||| ||||| || || Sbjct 142992 CAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGG 142933 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || |||||| || | | || | || || | || ||| || Sbjct 142932 AATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTCTCAATCGTATCAGACGCCTCTAC 142873 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG--GCT-TATAA 138623 || | || | || || ||||| || || |||||||||||||||||| ||| ||||| Sbjct 142872 TTCCAAGGTAATGGTCTTGCCAGTAAGTGTCTTTACAAAAATCTGCATGGTGCTCTATAA 142813 Query 138624 TA 138625 || Sbjct 142812 TA 142811 >seq150 Length=403005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||||||| | || | | || || || || |||||||| ||| Sbjct 341402 CCTCCTCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAA 341343 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | || || ||||| ||||||| | | || | |||||| || || ||||| Sbjct 341342 AGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGA 341283 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||| | |||| | ||| | ||| || | | || || Sbjct 341282 ATTCCTTCTTTGTC-CTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGAC 341224 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||| ||||| |||||||||||||| ||||||||| Sbjct 341223 TTCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCATG 341175 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 138469 TGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATT 138528 |||||||| | | |||||||||| ||||| || ||||| || ||||||||||| |||| Sbjct 341549 TGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATT 341490 Query 138529 TTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCA 138588 || ||||| | ||| | ||||| | | ||| || || | || | ||||| ||| Sbjct 341489 TTAGCTTTTACATTTTCTATAGTGTCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCA 341430 Query 138589 GTCAGAGTTTTTACAAAAATCTGCAT 138614 || |||||||| || || || ||||| Sbjct 341429 GTGAGAGTTTTCACGAAGATTTGCAT 341404 >seq222 Length=252824 Score = 86.0 bits (94), Expect = 6e-12 Identities = 124/168 (74%), Gaps = 8/168 (5%) Strand=Plus/Minus Query 22673 AGACCGCCGTCACAGCCCATGTCGACATGGTCGCAATCGACCAGCTGCTGCTCCGACAAA 22732 |||||||||| || ||| || | | ||||| |||||||||| ||||| |||| Sbjct 237402 AGACCGCCGTTGCAACCCTCATCCAAGTCATCGCAGTCGACCAGCTCTTGCTCGGACAG- 237344 Query 22733 TCGATAAG-GC-GATCGTACTTGATCGCGTACTGACTCTCGAGCGCGCCCAG--ACCGGC 22788 ||| || || | | | ||||||||| ||||| | ||||| ||| || |||| Sbjct 237343 -CGACAACAGCTGGCCATGCTTGATCGCATACTGGCCCTCGACATTGCC-AGTTACCGA- 237287 Query 22789 AAAAGCCCAACAGGCGCCGCACATGCCCTGATCTTTCACCGACGTGAC 22836 ||| |||||||| | ||||||||||||||||||||| ||||| || || Sbjct 237286 AAACGCCCAACACGAGCCGCACATGCCCTGATCTTTTACCGAAGTCAC 237239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496221731296320