Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23]
6,556 sequences; 282,776,121 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq150 140 2e-28
seq160 127 1e-24
>seq150
Length=403005
Score = 140 bits (154), Expect = 2e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024
||||| | ||||| || || ||||| || |||||||||||| || |||| | |||
Sbjct 341387 AAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAAAGGGTTCTTCCATCT 341328
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|||| ||| || || || | ||||||||||| || || ||||||||||| |||||
Sbjct 341327 TCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCC 341268
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
||||||| || ||| ||||||| ||||| | ||| || || || || ||||||
Sbjct 341267 TGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACTTCCAAAGTGATGGTT 341208
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || |||||||||||||| || |||||
Sbjct 341207 TTCCCAGTAAGAGTTTTTACAAAGATCTGCAT 341176
Score = 107 bits (118), Expect = 1e-18
Identities = 133/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 14995 ATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGC 15054
|||||||||||| || |||| | ||||| || ||||| ||||| | || | |||
Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526
Query 15055 TGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTA 15114
||||| ||| ||||| ||||| ||||| ||||| ||||||| ||||||||||
Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTG 341466
Query 15115 TCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGC 15174
|| || || || | |||||||||||| || || |||||||| || || ||||||
Sbjct 341465 TCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGC 341406
Query 15175 AT 15176
||
Sbjct 341405 AT 341404
Score = 91.5 bits (100), Expect = 1e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| || || | ||| ||||||||||| || || || ||||| || |||||||||||
Sbjct 342048 CCTCCCCGAAGTCTCAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAA 341989
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| |||| | ||||| || ||||| ||||| | || | ||| ||||| ||| |||
Sbjct 341988 AGAGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGA 341929
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTC 15107
|| ||||| ||||| || || ||||||| ||||
Sbjct 341928 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTC 341891
>seq160
Length=383029
Score = 127 bits (140), Expect = 1e-24
Identities = 156/211 (74%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025
|| ||||| || || || ||||| || || ||||| || ||| ||| || ||||||
Sbjct 143261 ACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTC--TGACAATGTGCGTCCGTCTT 143204
Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085
| | ||||| ||||| | ||||| | ||| ||||| |||||||||||||| ||
Sbjct 143203 CGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCT 143144
Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145
||||||| ||| || |||| || |||||| ||| || || |||||||||||||
Sbjct 143143 GAATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGACTTCCAAGGTAATGGTTT 143084
Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || || |||||||| ||||| ||||||||
Sbjct 143083 TGCCGGTTAGAGTTTTGACAAAGATTTGCAT 143053
Score = 105 bits (116), Expect = 5e-18
Identities = 163/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| || | | | ||| ||||| | || || || || || |||||||||||
Sbjct 143053 TGCCACCACGTAGACGAAGAACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATC-- 142996
Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065
||| ||| || ||||||| | ||||| ||||| | ||||| | ||| |||||
Sbjct 142995 TGACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGG 142936
Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125
||||||||||||||| || ||||| || || | || || ||||| ||
Sbjct 142935 TGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTCTCAATCGTATCAGACGCCTC 142876
Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||| || ||||||||||| || || || || || ||||||||||| |||||
Sbjct 142875 TACTTCCAAGGTAATGGTCTTGCCAGTAAGTGTCTTTACAAAAATCTGCAT 142825
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025
|| ||||| || || || ||||| |||||||||||||| ||| ||| || ||||||
Sbjct 143489 ACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATC--TGACAATGTGCGTCCGTCTT 143432
Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085
| | ||||| ||||| | ||||| | ||| ||||| ||||||||||| || ||
Sbjct 143431 CGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCTT 143372
Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145
|||||| || || |||| || || || || || || | || || ||||
Sbjct 143371 GGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGATTGTTT 143312
Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || || |||||||| ||||| || |||||
Sbjct 143311 TGCCGGTGAGAGTTTTGACAAAGATCTGCAT 143281
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| || | | | ||| ||||| | ||||| || ||||| || ||||| ||
Sbjct 143737 TGCCACCACGTAGACGAAGAACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTC-- 143680
Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065
||| ||| || ||||||| | |||||| ||||| | ||||| | ||| || ||
Sbjct 143679 TGACAATGTGCGTCCGTCTTCGAGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGG 143620
Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125
||||||||||| || || |||||| || || |||| || || || ||
Sbjct 143619 AGGAATTCCTTCTTTATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTC 143560
Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || ||||| || || |||||||| ||||| || |||||
Sbjct 143559 GACTTCCAATGTGATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143509
Score = 82.4 bits (90), Expect = 5e-11
Identities = 146/212 (69%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024
||| ||||| | || || || ||||| || ||||| || ||| ||| || |||||
Sbjct 143946 AACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTC--TGACAATGTGCGTCCGTCT 143889
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|| | ||||| ||||| | ||||| | || || || |||||||||||||| ||
Sbjct 143888 TCGAGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCC 143829
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
||||||| || || | || || || ||| || || || || || || |||
Sbjct 143828 TGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCAATGTGATTGTT 143769
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || |||||||| ||||| || |||||
Sbjct 143768 TTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357363443932460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |