Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq150 140 2e-28 seq160 127 1e-24 >seq150 Length=403005 Score = 140 bits (154), Expect = 2e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| | ||||| || || ||||| || |||||||||||| || |||| | ||| Sbjct 341387 AAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAAAGGGTTCTTCCATCT 341328 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 |||| ||| || || || | ||||||||||| || || ||||||||||| ||||| Sbjct 341327 TCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCC 341268 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||||| || ||| ||||||| ||||| | ||| || || || || |||||| Sbjct 341267 TGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACTTCCAAAGTGATGGTT 341208 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||||||||| || ||||| Sbjct 341207 TTCCCAGTAAGAGTTTTTACAAAGATCTGCAT 341176 Score = 107 bits (118), Expect = 1e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 14995 ATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGC 15054 |||||||||||| || |||| | ||||| || ||||| ||||| | || | ||| Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526 Query 15055 TGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTA 15114 ||||| ||| ||||| ||||| ||||| ||||| ||||||| |||||||||| Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTG 341466 Query 15115 TCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGC 15174 || || || || | |||||||||||| || || |||||||| || || |||||| Sbjct 341465 TCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGC 341406 Query 15175 AT 15176 || Sbjct 341405 AT 341404 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || | ||| ||||||||||| || || || ||||| || ||||||||||| Sbjct 342048 CCTCCCCGAAGTCTCAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAA 341989 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| || ||||| ||||| | || | ||| ||||| ||| ||| Sbjct 341988 AGAGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGA 341929 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTC 15107 || ||||| ||||| || || ||||||| |||| Sbjct 341928 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTC 341891 >seq160 Length=383029 Score = 127 bits (140), Expect = 1e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || ||||| || || || ||||| || || ||||| || ||| ||| || |||||| Sbjct 143261 ACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTC--TGACAATGTGCGTCCGTCTT 143204 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | | ||||| ||||| | ||||| | ||| ||||| |||||||||||||| || Sbjct 143203 CGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCT 143144 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||||||| ||| || |||| || |||||| ||| || || ||||||||||||| Sbjct 143143 GAATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGACTTCCAAGGTAATGGTTT 143084 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || |||||||| ||||| |||||||| Sbjct 143083 TGCCGGTTAGAGTTTTGACAAAGATTTGCAT 143053 Score = 105 bits (116), Expect = 5e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | | ||| ||||| | || || || || || ||||||||||| Sbjct 143053 TGCCACCACGTAGACGAAGAACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATC-- 142996 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 ||| ||| || ||||||| | ||||| ||||| | ||||| | ||| ||||| Sbjct 142995 TGACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGG 142936 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||||||||||||| || ||||| || || | || || ||||| || Sbjct 142935 TGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTCTCAATCGTATCAGACGCCTC 142876 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || ||||||||||| || || || || || ||||||||||| ||||| Sbjct 142875 TACTTCCAAGGTAATGGTCTTGCCAGTAAGTGTCTTTACAAAAATCTGCAT 142825 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || ||||| || || || ||||| |||||||||||||| ||| ||| || |||||| Sbjct 143489 ACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATC--TGACAATGTGCGTCCGTCTT 143432 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | | ||||| ||||| | ||||| | ||| ||||| ||||||||||| || || Sbjct 143431 CGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCTT 143372 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 |||||| || || |||| || || || || || || | || || |||| Sbjct 143371 GGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGATTGTTT 143312 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || |||||||| ||||| || ||||| Sbjct 143311 TGCCGGTGAGAGTTTTGACAAAGATCTGCAT 143281 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | | ||| ||||| | ||||| || ||||| || ||||| || Sbjct 143737 TGCCACCACGTAGACGAAGAACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTC-- 143680 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 ||| ||| || ||||||| | |||||| ||||| | ||||| | ||| || || Sbjct 143679 TGACAATGTGCGTCCGTCTTCGAGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGG 143620 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||||||||| || || |||||| || || |||| || || || || Sbjct 143619 AGGAATTCCTTCTTTATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTC 143560 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| || || |||||||| ||||| || ||||| Sbjct 143559 GACTTCCAATGTGATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143509 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||| ||||| | || || || ||||| || ||||| || ||| ||| || ||||| Sbjct 143946 AACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTC--TGACAATGTGCGTCCGTCT 143889 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||||| ||||| | ||||| | || || || |||||||||||||| || Sbjct 143888 TCGAGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCC 143829 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||||| || || | || || || ||| || || || || || || ||| Sbjct 143828 TGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCAATGTGATTGTT 143769 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| ||||| || ||||| Sbjct 143768 TTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357363443932460