Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq150 131 2e-25 seq160 127 2e-24 seq144 102 7e-17 seq60 102 7e-17 >seq150 Length=403005 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | ||| || || || || || ||||| || ||||| || |||||| Sbjct 341405 ATTCCTCCTCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCG 341346 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| || | ||| || || || | ||||| || ||||| || || Sbjct 341345 GAAAGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGA 341286 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| || |||||||| || | ||||| ||| || |||| ||| Sbjct 341285 GGAATTCCTTCTTTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCG 341226 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||||| || || |||||||||||||| || ||||| Sbjct 341225 ACTTCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCAT 341176 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 45159 ATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGT 45218 || || |||||| | |||| | ||| ||||| ||||| || || | || | ||| Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526 Query 45219 TGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTG 45278 || || || || |||||||||||||| ||||| ||||| ||| | ||||| ||| Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTG 341466 Query 45279 TCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGC 45338 || || | ||||||||| || |||| ||||| || || |||||||| || || |||||| Sbjct 341465 TCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGC 341406 Query 45339 AT 45340 || Sbjct 341405 AT 341404 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || ||||| |||| ||| || || ||||| || ||||| || ||||| Sbjct 342048 CCTCCCCGAAGTCTCAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAA 341989 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| ||||| ||||| || || | || | ||||| || || || ||| Sbjct 341988 AGAGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGA 341929 Query 45234 ATGCCTTCTTTATCTTGAATTTT 45256 ||||||||||| ||||| || || Sbjct 341928 ATGCCTTCTTTGTCTTGGATCTT 341906 >seq160 Length=383029 Score = 127 bits (140), Expect = 2e-24 Identities = 153/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGTCCAAT 45194 ||| || |||||||| || |||||||| || || |||| | | | || || | Sbjct 143256 ATGTAGAGTTGATTCTTTCTGGATATTGTAGTC--TGACAATGTGCGTCCGTCTTCGAGC 143199 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 |||||||| || | ||||| | |||||||| || ||||| ||||| ||||| |||||| Sbjct 143198 TGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCTGAATT 143139 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || ||||| ||| | ||| ||||| | |||||||| | |||| ||||||||| Sbjct 143138 TTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGACTTCCAAGGTAATGGTTTTGCCG 143079 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| ||||| |||||||| Sbjct 143078 GTTAGAGTTTTGACAAAGATTTGCAT 143053 Score = 123 bits (136), Expect = 2e-23 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || |||||||| |||| ||||| || |||||||| ||||| || || || Sbjct 144194 ATACCTCCACGAAGCCTCAAGACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCC 144135 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | || || | || ||||| ||| | ||||||| |||||| || | Sbjct 144134 --GACAATGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTG 144077 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | ||||| ||||| ||||| |||||||| || | || | || | |||||||| | | Sbjct 144076 GAGGAATTCCTTCCTTATCCTGAATTTTGGCCTTAA-CGTTCTCAATTGTGTCGGACGCC 144018 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | || | ||||| ||||| |||||||| || || || ||||| Sbjct 144017 TCGACTTCCANTGTGATTGTTTTNCCGGTNAGAGTTTTGACNAAGATCTGCAT 143965 Score = 116 bits (128), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGTCCAAT 45194 ||| | || ||||||||||||||||| || || |||| | | | || || | Sbjct 143940 ATGNANAGTNGATTCCTTTTGGATATTGTAGTC--TGACAATGTGCGTCCGTCTTCGAGC 143883 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 ||||| || || | ||||||| |||||| || || ||||| ||||| ||||| |||||| Sbjct 143882 TGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGAATT 143823 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || || | || | || | |||||||| | ||||||||| | || | |||||||| Sbjct 143822 TTGGCCTTAA-CGTTCTCAATTGTGTCGGACGCCTCGACTTCCAATGTGATTGTTTTGCC 143764 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||||| ||||| || ||||| Sbjct 143763 GGTTAGAGTTTTGACAAAGATCTGCAT 143737 Score = 114 bits (126), Expect = 1e-20 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGTCCAAT 45194 ||| || |||||||| || || || || ||||| |||| | | | || || | Sbjct 143484 ATGTAGAGTTGATTCTTTCTGTATGTTGTAATC--TGACAATGTGCGTCCGTCTTCGAGC 143427 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 |||||||| || | ||||| | |||||||| || ||||| |||||||||||||| ||| Sbjct 143426 TGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTGGATT 143367 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || |||| ||| | ||||| || | ||||||||| || || | ||||||||| Sbjct 143366 TTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGATTGTTTTGCCG 143307 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| ||||| || ||||| Sbjct 143306 GTGAGAGTTTTGACAAAGATCTGCAT 143281 Score = 114 bits (126), Expect = 1e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGTCCAATTGTTTTC 45201 || ||||||||||||||||| || || |||| | | | || || | |||||| | Sbjct 143705 GTAGATTCCTTTTGGATATTGTAGTC--TGACAATGTGCGTCCGTCTTCGAGTTGTTTAC 143648 Query 45202 CTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTT 45261 | || | ||||| | ||||| || || ||||| |||||||||||||| ||||| | Sbjct 143647 CAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTATCTTGGATTTTGGCCT 143588 Query 45262 TGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAG 45321 ||| ||| | ||||| || | ||||||||| | || | |||||||||||||||| Sbjct 143587 TGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAATGTGATTGTTTTGCCGGTTAGAG 143528 Query 45322 TTTTTACAAAAATTTGCAT 45340 |||| ||||| || ||||| Sbjct 143527 TTTTGACAAAGATCTGCAT 143509 Score = 113 bits (124), Expect = 4e-20 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| || || || | || |||| |||||| || ||||| || || ||||| || || Sbjct 144649 TTCCACCACGAAGTCGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCC- 144591 Query 45172 TGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| || | | || || | || ||||| ||| | ||||||| || |||||||| Sbjct 144590 -GACAGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGG 144532 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288 ||||| ||||||||||| || ||||| |||| || | || | ||||| || | || Sbjct 144531 AGGAATTCCTTCTTTATCCTGTATTTTGGCCTTGA-CGTTCTCAATAGTGTCAGACGCCT 144473 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| | || | ||||||||||| || ||||| ||||| || ||||| Sbjct 144472 CGACTTCCAATGTGATTGTTTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 144421 Score = 100 bits (110), Expect = 3e-16 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGTCCAAT 45194 ||||| || |||||||| ||||| || ||||| |||| | | | || || | Sbjct 143028 ATGCAAAGTGGATTCCTTCTGGATGTTGTAATC--TGACAATGTGCGTCCGTCTTCGAGC 142971 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 |||||||| || | ||||||| |||||||| || ||||| ||||| |||||||| ||| Sbjct 142970 TGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGGATT 142911 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || |||| || | || | || || || | ||| ||||| | |||| || ||||| Sbjct 142910 TTAGCCTTGA-CGTTCTCAATCGTATCAGACGCCTCTACTTCCAAGGTAATGGTCTTGCC 142852 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||||||||| ||||| Sbjct 142851 AGTAAGTGTCTTTACAAAAATCTGCAT 142825 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGTCCAAT 45194 ||| || |||||||| || ||||| || || || ||| || | | || || | Sbjct 144396 ATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCC--GACAGTGTGCGTCCGTCCTCGAGC 144339 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || ||||| ||| | ||||||| ||||| ||||| ||||| ||||||||||| || ||| Sbjct 144338 TGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTTATCCTGTATT 144279 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || ||||| || | |||||| || | ||||| || ||||| | ||||| || Sbjct 144278 TTGGCTTTGACATTCTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGATGGTTTTACCT 144219 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || |||||||| Sbjct 144218 GTGAGTGTCTTGACGAATATTTGCAT 144193 >seq144 Length=417326 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 124101 ATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTA 124160 ||| | || ||||| |||||| | | | |||||||||||||||| | ||| || || Sbjct 5955 ATTCTTCAATACGATATGTGGGACGTAAAACCGACAAATTTGTGGAATTGGGACGAATTG 5896 Query 124161 AAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACG 124220 || | || ||| ||||||| | | || ||||| ||| | || |||||| ||| Sbjct 5895 AAGGCAAAAATCGCGAAGCACGGTGTCAGAAATTCGCTTTTGATAGCTCCCATGCCTACG 5836 Query 124221 GCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTG 124280 || |||| || || ||||||||||| ||||| ||| ||||||| | ||| | |||| | Sbjct 5835 GCCTCCACGGCGCAGATTTTAGGAAATAACGAGTCCATCGAGCCTTACACAAGCAATATC 5776 Query 124281 TACGTGCGACGAGTGTTAGCCGGCGATTT 124309 || | |||| ||| || | || || || Sbjct 5775 TATATTAGACGCGTGCTATCGGGAGAATT 5747 >seq60 Length=814933 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 124101 ATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTA 124160 ||| | || ||||| |||||| | | | |||||||||||||||| | ||| || || Sbjct 811830 ATTCTTCAATACGATATGTGGGACGTAAAACCGACAAATTTGTGGAATTGGGACGAATTG 811771 Query 124161 AAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACG 124220 || | || ||| ||||||| | | || ||||| ||| | || |||||| ||| Sbjct 811770 AAGGCAAAAATCGCGAAGCACGGTGTCAGAAATTCGCTTTTGATAGCTCCCATGCCTACG 811711 Query 124221 GCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTG 124280 || |||| || || ||||||||||| ||||| ||| ||||||| | ||| | |||| | Sbjct 811710 GCCTCCACGGCGCAGATTTTAGGAAATAACGAGTCCATCGAGCCTTACACAAGCAATATC 811651 Query 124281 TACGTGCGACGAGTGTTAGCCGGCGATTT 124309 || | |||| ||| || | || || || Sbjct 811650 TATATTAGACGCGTGCTATCGGGAGAATT 811622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451966158337760