Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq150 138 3e-27 seq239 132 1e-25 seq160 125 2e-23 >seq150 Length=403005 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || |||||||| || || || || || |||| |||||| || | | || Sbjct 341397 TCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAAAGGGT 341338 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| || ||||| ||||| || || | ||||||||| || ||| |||||| Sbjct 341337 TCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCC 341278 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| |||||||| || ||| || ||| | ||| |||| | ||| || ||||| Sbjct 341277 TTCTTTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACTTCCAA 341218 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||| ||||| || || Sbjct 341217 AGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTG 341179 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || || ||||| ||||| | ||||||||||| || | ||||||||||| |||||||| Sbjct 341305 ATTTTTGCCGGTAAGCAACTAGAAGATGGAAGAACCCTTTCCGATTACAACATCCAGAAA 341364 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 || || || ||||||||||||||| | |||||| Sbjct 341365 GAATCCACACTTCACCTTGTTTTGCGCCTTCGA 341397 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| || || || ||||||||||||||||| ||| | | ||||||||| ||||| Sbjct 341948 CTAATCTTTGCTGGTAAACAGTTGGAAGATGGAAGAACTCTTTCTGATTACAACATCCAG 342007 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| || || || || | |||||||||||||| Sbjct 342008 AAAGAATCCACACTACATTTAGTTTTGAGACTTCG 342042 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | || || || || || || |||| |||||| |||| | ||| Sbjct 342042 CGAAGTCTCAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAAAGAGTT 341983 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||||| ||| || || || ||||| ||||| || || || ||| ||| ||| Sbjct 341982 CTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGAATGCCT 341923 Query 199529 TCTCGCTCCTGAATCTT 199545 ||| || || ||||| Sbjct 341922 TCTTTGTCTTGGATCTT 341906 Score = 84.2 bits (92), Expect = 5e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 199450 GTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTG 199509 |||||| || | | || ||||||||||||| ||| || || || ||||| ||||| || Sbjct 341583 GTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTG 341524 Query 199510 CTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGT 199568 || || ||| ||| |||||| || || || ||| |||| || ||| | |||| Sbjct 341523 TTGATCGGGAGGAATGCCTTCTTTGTCTTGGAT-TTTAGCTTTTACATTTTCTATAGTGT 341465 Query 199569 CTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| | || || || | || || || || || |||||||||||||| || ||||| Sbjct 341464 CTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTG 341407 >seq239 Length=229837 Score = 132 bits (146), Expect = 1e-25 Identities = 143/188 (76%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| |||||||||| | ||| | |||||| ||||||||||| ||||||||| Sbjct 6123 CCTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAG 6182 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 |||||||||||||| ||||| || || || || |||||||| |||||| | Sbjct 6183 ATGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTT 6242 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 || | ||||| | | ||| || || | || || ||||||||||||||||||||||| Sbjct 6243 TCAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACG 6302 Query 199619 AAAATTTG 199626 || || || Sbjct 6303 AATATCTG 6310 >seq160 Length=383029 Score = 125 bits (138), Expect = 2e-23 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || || || |||| ||||||||| | || || | ||| || || |||||| Sbjct 144395 TGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGACAGTGTGCGTCCGTCCTCGAGCTGC 144336 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 |||||||||||||| | | |||||| |||||| |||||||||| ||||| || ||| Sbjct 144335 TTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTTATCCTGTAT-TTT 144277 Query 199547 TGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || || || |||| |||||| | | ||| || |||| ||||| || ||||| || Sbjct 144276 GGCTTTGACATTCTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGATGGTTTTACCTGT 144217 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| Sbjct 144216 GAGTGTCTTGACGAATATTTG 144196 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| ||| || | || ||||| || || || || | |||||||| | || || Sbjct 144641 CGAAGTCGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGACAGTGTG 144582 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || || |||||||||||||||||||| | | ||| ||||||||| ||||||| Sbjct 144581 CGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGAATTCCT 144522 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| || || ||| ||| || | ||||| | | || || ||||| Sbjct 144521 TCTTTATCCTGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGACTTCCAAT 144462 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| ||||| ||||| || || Sbjct 144461 GTGATTGTTTTGCCGGTGAGGGTTTTGACAAAGATCTG 144424 Score = 122 bits (134), Expect = 2e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| |||| ||| | || | ||| || ||||| |||| ||||||||| | ||| || Sbjct 144185 CGAAGCCTCAAGACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCCGACAATGTG 144126 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || || |||||||||||||||||||| | | ||||| || ||| ||||||| Sbjct 144125 CGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCT 144066 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||| || ||| ||| || | ||||| | | || || |||| Sbjct 144065 TCCTTATCCTGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCANT 144006 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||| || || || || Sbjct 144005 GTGATTGTTTTNCCGGTNAGAGTTTTGACNAAGATCTG 143968 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || || || || | |||||| || | ||| || | ||| ||||| ||||| Sbjct 143483 TGTAGAGTTGATTCTTTCTGTATGTTGTAATCTGACAATGTGCGTCCGTCTTCGAGCTGT 143424 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| || ||||| | | ||||||||| ||| |||||||||| || || || || Sbjct 143423 TTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTGGATTTTG 143364 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| ||| ||| | ||||| | | || || |||| ||||| || || || ||| Sbjct 143363 GCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGATTGTTTTGCCGGTG 143304 Query 199607 AGAGTTTTCACAAAAATTTG 199626 |||||||| ||||| || || Sbjct 143303 AGAGTTTTGACAAAGATCTG 143284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178822572059252