Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq160 109 6e-19 seq239 98.7 1e-15 >seq160 Length=383029 Score = 109 bits (120), Expect = 6e-19 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 ||| || | |||||| ||| ||||| ||||| |||||||| || | ||||| |||| Sbjct 144177 CAAGACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGTCCGTC 144118 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 ||||||||||| |||||||| ||||| | ||||| || | || | | ||||| || Sbjct 144117 CTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATC 144058 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | || || ||| | || | | |||||| || || || |||| ||||| || Sbjct 144057 CTGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCANTGTGATTGT 143998 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || ||||| || ||||| ||||| Sbjct 143997 TTTNCCGGTNAGAGTTTTGACNAAGATCTGCAT 143965 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || || ||||||||||| || || ||||| |||| ||||||||||| |||||||| Sbjct 144611 TCTTTCTGTATATTGTAGTCCGACAGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAG 144552 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||| ||||| | || | | || || ||| || || ||||| || Sbjct 144551 ATCAATCTCTGTTGGTCCGGAGGAATTCCTTCTTTATCCTGTATTTTGGCCTTGACGTTC 144492 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || || || |||| ||||| |||||||| || || ||||| ||| Sbjct 144491 TCAATAGTGTCAGACGCCTCGACTTCCAATGTGATTGTTTTGCCGGTGAGGGTTTTGACA 144432 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 144431 AAGATCTGCAT 144421 Score = 102 bits (112), Expect = 9e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | || ||| | |||| ||| | || || || |||||||||||||| | Sbjct 143281 TGCCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTG 143222 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | ||||| |||| |||||||| || || || || ||||| | ||||||||| | | Sbjct 143221 ACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAG 143162 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||| ||| || || |||| | | | || ||| || ||| | Sbjct 143161 GAATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGA 143102 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| || ||||||||||| || || ||||| |||||||||||||| Sbjct 143101 CTTCCAAGGTAATGGTTTTGCCGGTTAGAGTTTTGACAAAGATTTGCAT 143053 Score = 102 bits (112), Expect = 9e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | || ||| | |||| ||| || ||| |||||||||||||||||||| | Sbjct 143737 TGCCACCACGTAGACGAAGAACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCTG 143678 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | ||||| |||| ||||| || || || || || ||||| | |||||| || | | Sbjct 143677 ACAATGTGCGTCCGTCTTCGAGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAG 143618 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || || || ||| || ||||| | | | ||||| || || | Sbjct 143617 GAATTCCTTCTTTATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGA 143558 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||||| |||||||| || || ||||| |||||||| ||||| Sbjct 143557 CTTCCAATGTGATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143509 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||||||||||||||| || | ||||| |||| |||||||| || || || || Sbjct 143927 TCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCGAGCTGTTTACCAGCAAAG 143868 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||| || | || | | ||||| ||| || || ||| | || Sbjct 143867 ATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGAATTTTGGCCTTAACGTTC 143808 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || || || |||| ||||| |||||||| || || ||||| ||| Sbjct 143807 TCAATTGTGTCGGACGCCTCGACTTCCAATGTGATTGTTTTGCCGGTTAGAGTTTTGACA 143748 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 143747 AAGATCTGCAT 143737 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | || ||| | |||| ||| | || || || ||||| |||||||| | Sbjct 144421 TGCCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCG 144362 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| |||| ||||||||||| |||||||| ||||| | |||||| || | | Sbjct 144361 ACAGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAG 144302 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || || ||| || || |||| || | | ||||| || ||| | Sbjct 144301 GAATTCCTTCTTTATCCTGTATTTTGGCTTTGACATTCTCGATGGTGTCCGACGCTTCGA 144242 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||||||||||| || || || || || || || |||||||| Sbjct 144241 CCTCCAGAGTGATGGTTTTACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 >seq239 Length=229837 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 46404 CCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||| || ||||| || | || || ||||||||||||||||| Sbjct 6123 CCTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAG 6182 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||||| || | || | | ||||||||| ||||| ||| | | Sbjct 6183 ATGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTT 6242 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | |||||| || | || ||||| || ||||| || ||||| || Sbjct 6243 TCAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACG 6302 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 6303 AATATCTGCAT 6313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565192078713120