Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq160 105 5e-18 seq150 104 2e-17 >seq160 Length=383029 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || |||||||| ||||| ||| ||||| ||||| || || | Sbjct 143736 GCCACCACGTAGACGAAGAACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCTGA 143677 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| |||| | || || | |||||| || |||| || || | ||||||||| | || Sbjct 143676 CAATGTGCGTCCGTCTTCGAGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGG 143617 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCA 39670 | |||||||| || ||||| || | | | | |||||| | ||| | | | Sbjct 143616 AATTCCTTCTTTATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCT-CGA 143558 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | ||||| || |||||||| || |||| |||||| || |||||||||||| Sbjct 143557 CTTCCAATGTGATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCATG 143508 Score = 100 bits (110), Expect = 2e-16 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | ||| ||| ||||| ||||| || || | | Sbjct 143963 CCNCCACGNANACGAAGAACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTCTGAC 143904 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || |||| | || || | ||||| || |||| || || | |||||||| | || Sbjct 143903 AATGTGCGTCCGTCTTCGAGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGA 143844 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCAC 39671 | ||||| || || ||||| |||| || | | |||||| | ||| | | || Sbjct 143843 ATTCCTTCCTTATCCTGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCT-CGAC 143785 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || |||||||| || |||| |||||| || |||||||||||| Sbjct 143784 TTCCAATGTGATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCATG 143736 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| ||||||||||| | ||| |||||| ||||| || ||||| | Sbjct 143508 GCCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATCTGA 143449 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| |||| | || || | ||||| || |||| || || | |||||| || | || Sbjct 143448 CAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGG 143389 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCA 39670 | |||||||| || ||||| || | | | | |||||| | ||| || | Sbjct 143388 AATTCCTTCTTTATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGC-CTCGA 143330 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | |||| || |||||||| || || | |||||| || |||||||||||| Sbjct 143329 CTTCCAGTGTGATTGTTTTGCCGGTGAGAGTTTTGACAAAGATCTGCATG 143280 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| ||||||||||| | ||| |||||| || ||||| || || | Sbjct 143280 GCCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGA 143221 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| |||| | || || | ||||| || |||| || || | |||||| || | || Sbjct 143220 CAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGG 143161 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCA 39670 | ||||| || || ||||| ||| | | | | || || | ||| ||| | Sbjct 143160 AATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTTTCAATGGTATCGGACGC-TTCGA 143102 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | ||||| ||||| ||||| || |||| |||||| || ||||| |||||| Sbjct 143101 CTTCCAAGGTAATGGTTTTGCCGGTTAGAGTTTTGACAAAGATTTGCATG 143052 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| || ||||||| |||| |||||| |||||||| || || | || |||| | Sbjct 144635 CGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGACAGTGTGCGTCCG 144576 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | || || ||| | || || || | ||| || |||| || | |||||||| Sbjct 144575 TCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGAATTCCTTCTTTA 144516 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCACGTCCAAAGTAAT 39683 || |||||| || | || | | ||||| | ||| | | || ||||| || || Sbjct 144515 TCCTGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCT-CGACTTCCAATGTGAT 144457 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||||| || || | ||||| || |||||||||||| Sbjct 144456 TGTTTTGCCGGTGAGGGTTTTGACAAAGATCTGCATG 144420 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| ||||||||||| | ||| |||||| || || || || || | Sbjct 144420 GCCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGA 144361 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || |||| | || || | || || ||| | || || || | ||||||||||| || Sbjct 144360 CAGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGG 144301 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCA 39670 | |||||||| || |||||| ||| | || | | ||||| | ||| ||| | Sbjct 144300 AATTCCTTCTTTATCCTGTATTTTGGCTTTGACATTCTCGATGGTGTCCGACGC-TTCGA 144242 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||| ||| || |||||||| || | || || ||||| || ||||| Sbjct 144241 CCTCCAGAGTGATGGTTTTACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 >seq150 Length=403005 Score = 104 bits (114), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCA 39585 |||||| || || || ||||||| ||| | | | |||| || | ||| || ||| || Sbjct 341367 TTCTTTCTGGATGTTGTAATCGG--AAAGGGTTCTTCCATCTTCTAGTTGCTTACCGGCA 341310 Query 39586 AAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATC 39645 ||||| |||||||||||||| | || | ||||||||||| ||||| |||| Sbjct 341309 AAAATCAAACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTAACA 341250 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 | ||| || |||| ||| || |||||||| || ||||| || || | ||||||| Sbjct 341249 TTTTCTATGGTATCTGAAGCTTCGACTTCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTT 341190 Query 39706 ACGAAGATCTGCATG 39720 || |||||||||||| Sbjct 341189 ACAAAGATCTGCATG 341175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347341844734748