Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq160 120 3e-22 seq63 111 2e-19 seq150 91.5 1e-13 >seq160 Length=383029 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || || ||||| || ||||||||||| | || ||||| || | Sbjct 144193 ATGCAAATATTCGTCAAGACACTCACAGGTAAAACCATCACTCTGGAGGTCGAAGCGTCG 144252 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| ||||| | || ||||| |||||||| | || || Sbjct 144253 GACACCATCGAGAATGTCAAAGCCAAAATACAGGATAAAGAAGGAATTCCTCCGGATCAG 144312 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | ||| || || ||||| || |||| ||||| || ||||||||| Sbjct 144313 CAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTCGGACTACAAC 144372 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || ||| | || || |||||||| || ||| Sbjct 144373 ATCCAGAAAGAATCAACTCTACATTTGGTACTTCGT 144408 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || ||||||||||| ||| | || ||||| || || Sbjct 143053 ATGCAAATCTTTGTCAAAACTCTAACCGGCAAAACCATTACCTTGGAAGTCGAAGCGTCC 143112 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || ||||| | |||| ||||| | || || || |||||||| | ||||| Sbjct 143113 GATACCATTGAAAACG-TCAAAGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGACCA 143171 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || |||||||| || |||| ||||| | |||||||| Sbjct 143172 GCAGAGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGACTACAA 143231 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || ||| | || || |||||||| || ||| Sbjct 143232 TATCCAGAAAGAATCAACTCTACATTTGGTACTTCGT 143268 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || |||||||| ||||| | || |||||||| | Sbjct 143509 ATGCAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCT 143568 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | ||||||| || ||||| |||||||| | || || Sbjct 143569 GACACAATTGAAAACG-TCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGATCA 143627 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||| || || |||| ||||| | |||||||| Sbjct 143628 GCAGAGGTTGATCTTTGCTGGTAAACAACTCGAAGACGGACGCACATTGTCAGACTACAA 143687 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || | |||||||| || ||| Sbjct 143688 TATCCAAAAGGAATCTACTTTACATTTGGTTCTTCGT 143724 Score = 104 bits (114), Expect = 2e-17 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || |||||||| ||||| | || |||||||| || Sbjct 143737 ATGCAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCC 143796 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||| | ||||| | || || || |||||||| | || || Sbjct 143797 GACACAATTGAGAACG-TTAAGGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCA 143855 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | | || | || || |||||||| || |||| ||||| | |||||||| Sbjct 143856 GCAAAGATTGATCTTTGCTGGTAAACAGCTCGAAGACGGACGCACATTGTCAGACTACAA 143915 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || | |||||||| || ||| Sbjct 143916 TATCCAAAAGGAATCNACTNTNCATTTGGTTCTTCGT 143952 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || ||||| || || || ||||| ||||| ||| | || || ||||| | Sbjct 142825 ATGCAGATTTTTGTAAAGACACTTACTGGCAAGACCATTACCTTGGAAGTAGAGGCGTCT 142884 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || |||| | || | ||||||| || || || |||||||| | ||||| Sbjct 142885 GATACGATTGAGAACG-TCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCAGACCA 142943 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || |||||||| || |||| ||||| | || ||||| Sbjct 142944 GCAGAGATTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTACAA 143003 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || |||||||||| || ||| Sbjct 143004 CATCCAGAAGGAATCCACTTTGCATTTGGTTCTTCGT 143040 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || || ||||| ||||| | || |||||||| || Sbjct 143965 ATGCAGATCTTNGTCAAAACTCTNACCGGNAAAACAATCACANTGGAAGTCGAGGCGTCC 144024 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||| | ||||| | || || || |||||||| | || || Sbjct 144025 GACACAATTGAGAACG-TTAAGGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCA 144083 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | | || | ||| || || ||||| || |||| ||||| | |||||||| Sbjct 144084 GCAAAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACATTGTCGGACTACAA 144143 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||| |||||| | || ||||||| || Sbjct 144144 CATCCAGAAGGAATCTACTTTGCATTTAGT 144173 >seq63 Length=804878 Score = 111 bits (122), Expect = 2e-19 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 132928 GAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAAT 132987 || |||||||| ||||||||||| | ||| ||||| | || || || || | |||||| Sbjct 4968 GAGATGAGTTCATTGCTGAAAGTAAGGCCTGGCATAACCCCTCGCTTCTTTAACCAAAAG 4909 Query 132988 ATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGC 133047 || ||||| |||||||| ||||||| |||||||| || ||||| || | | || Sbjct 4908 ATCGCGGCAAAACTGCCGCTGAAGAAGATTCCCTCGACCGCTGCGAATGCGAGTACACGT 4849 Query 133048 TCGCCGAACGTGGC-TTCT-TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTT 133105 ||| ||||| || ||| || || |||||| | | |||||| | || |||| | Sbjct 4848 TCGGGAAACGTTGCGCTCTCGTGATG--GATCCATTGTAACGCCCAATTAGCTTTTTTCT 4791 Query 133106 TGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139 | ||||| || | |||||||| ||||| ||||| Sbjct 4790 TCACGCAAGGGAGAGTTTCGATCGCGTTAAACAA 4757 >seq150 Length=403005 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || |||||||| || || || ||||||||||| | || ||||| || | Sbjct 341176 ATGCAGATCTTTGTAAAAACTCTTACTGGGAAAACCATCACTTTGGAAGTCGAAGCTTCA 341235 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| |||| | ||||| | |||||||| |||||||| | || || Sbjct 341236 GATACCATAGAAAATGTTAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 341295 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| || || || || || || || | | ||||| ||| |||||| Sbjct 341296 CAGCGTTTGATTTTTGCCGGTAAGCAACTAGAAGATGGAAGAACCCTTTCCGATTACAAC 341355 Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || ||| | || || || Sbjct 341356 ATCCAGAAAGAATCCACACTTCA 341378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500131810839040