Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq371 206 1e-47 seq150 140 1e-27 seq160 109 2e-18 seq61 96.9 1e-14 >seq371 Length=115487 Score = 206 bits (228), Expect = 1e-47 Identities = 355/514 (69%), Gaps = 5/514 (1%) Strand=Plus/Plus Query 451103 GATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAGAAAAAA 451162 ||||| |||||| ||||||| ||| | |||||||| || || |||| || | ||| Sbjct 13627 GATGCAAAACGTCTAATTGGTCGTCGATTTGATGATGCAACGGTGCAAAGTGACATGAAA 13686 Query 451163 TTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAA 451222 || | | | ||||| ||| | ||| || || | || ||||| || || Sbjct 13687 CACTGGCCGTTTACGGTAGTGAATGATGCAGGCAAACCAAAGATCAAAGTATCATACAAG 13746 Query 451223 GGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAA 451282 |||||||| ||||| ||| || |||||| |||| || |||||| | || ||||||||| Sbjct 13747 GGTGAAACAAAAACCTTTTTCCCCGAAGAAGTTTCTTCCATGGTTTTAACAAAAATGAAA 13806 Query 451283 GAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCT 451342 || ||||| ||| |||| |||| || || |||| || |||||||| || || Sbjct 13807 GAGACAGCCGAAGCATATCTTGGCAAAAATGTAACAAATGCTGTTATTACTGTGCCTGCC 13866 Query 451343 TATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAAT 451402 || ||||| || | || | |||||||| || ||||| || |||||||||| | ||| Sbjct 13867 TACTTCAACGACTCTCAGAGACAAGCAACAAAGGATGCTGGCGCTATTGCTGGTCTCAAT 13926 Query 451403 GTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCA 451462 ||||| | || || || ||||| ||||| ||||| |||||||||| || | || | Sbjct 13927 GTTCTCAGGATAATAAACGAACCGACAGCGGCTGCAATAGCATATGGCCTTG----ATAA 13982 Query 451463 AAAGA-AACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATAC 451521 |||| ||| ||||| ||| || | | ||||| || || ||||| || |||| Sbjct 13983 GAAGACTTCAGGCGAAAAGAATGTTCTGATCTTTGACTTGGGCGGAGGCACCTTTGATGT 14042 Query 451522 TTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCA 451581 || | | |||| || ||||| | |||||||| || | || ||| || || || Sbjct 14043 ATCAATCTTGACAATCGAGGATGGCATCTTTGAAGTGAAATCCACAGCTGGCGACACGCA 14102 Query 451582 TCTAGGAGGTGAAGATATTGATAATGCAATTGTG 451615 ||| || || ||||| |||||||| ||| ||| Sbjct 14103 TCTTGGCGGAGAAGACTTTGATAATCGAATGGTG 14136 Score = 114 bits (126), Expect = 5e-20 Identities = 338/512 (66%), Gaps = 18/512 (4%) Strand=Plus/Plus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 ||||| ||||| |||||||| || || || || ||||| || || ||||| || | | Sbjct 14512 AATCCGGATGAGGCTGTTGCTTACGGCGCAGCTGTTCAGGCGGCGATTCTG-CATGGCGA 14570 Query 452051 GATGAT-GAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGT 452109 | | ||| || | |||| | || | | || || || || || || | ||| | Sbjct 14571 CAAGTCCGAAGAAGTTCAAGATCTGCTTCTGCTGGACGTGACCCCACTGTCGTTGGGAAT 14630 Query 452110 TGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCT--ATTCCTTGT 452167 ||| || ||||| || | ||||| | | | ||||| ||||||| | || ||| Sbjct 14631 TGAGACCGCTGGCGGTGTCATGACCACTCTGATTAA--GAGGAACACCACGATACCTACA 14688 Query 452168 AAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTG 452227 || ||| |||||||| | ||| || || ||||| || ||| ||| ||||| Sbjct 14689 AAGCAGACGCAAACATTCACCACATATTCCGACAATCAACCGGGAGTACTTATCCAAGTC 14748 Query 452228 TTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCA 452287 | || |||||| | || ||||| |||||| || | || || |||| | || Sbjct 14749 TACGAGGGAGAAAGAGCGATGACCAAAGATAACAACATTCTTGGCAAATT--CGAATT-- 14804 Query 452288 AAC----ATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGA 452343 ||| || || || ||| || || || ||||||||| | |||| ||| |||| Sbjct 14805 AACGGGAATACCACCGGCGCCTAGAGGTGTGCCACAAATTGAAGTCACCTTCGATATTGA 14864 Query 452344 TGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAAT 452403 ||| || ||||| || || || ||| | || ||||| | || ||| | | || || Sbjct 14865 TGCCAACGGTATACTAAACGTCTCTGCGATCGAGAAATCTACGGGTAAAGAAAACAAGAT 14924 Query 452404 TACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGA 452463 |||||||| || || || || || || |||||||||||||| | |||||| | || Sbjct 14925 CACAATTACCAACGACAAGGGTCGATTGTCGAAAGAAGATATTGAGAGAATGGTGAACGA 14984 Query 452464 AGCAGAAAAATTCAAGGAT--GATGATGAACA 452493 ||| || |||| | ||| || |||||||| Sbjct 14985 AGCCGAGAAAT--ACCGATCGGAAGATGAACA 15014 >seq150 Length=403005 Score = 140 bits (154), Expect = 1e-27 Identities = 178/244 (73%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 391040 TTATATT-ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATG 391098 ||| ||| || ||| | || || || ||||| || ||||| ||||| || ||| | || | Sbjct 341165 TTAGATTCATCATGCAGATCTTTGTAAAAACTCTTACTGGGAAAACCATCACTTTGGAAG 341224 Query 391099 TTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTC 391158 | ||| | || |||| ||| ||| | |||| |||||||| || || |||||||||| Sbjct 341225 TCGAAGCTTCAGATACCATAGAAAATGTTAAGGCCAAAATTCAGGACAAAGAAGGAATTC 341284 Query 391159 CTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGG 391218 |||||||||| || ||||| ||||| | || || ||||| |||||||||||||| | Sbjct 341285 CTCCTGATCAGCAGCGTTTGATTTTTGCCGGTAAGCAACTAGAAGATGGAAGAACCCTTT 341344 Query 391219 CGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAA 391278 | ||||| || || | || || | ||||||||| | || || | || ||||| || Sbjct 341345 CCGATTACAACATCCAGAAAGAATCCACACTTCACCTTGTTTTGCGCCTTCGAGGAGGAA 341404 Query 391279 TACA 391282 | || Sbjct 341405 TGCA 341408 Score = 118 bits (130), Expect = 4e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| ||||| || ||||| ||||| ||||| ||||| || || | || Sbjct 341403 AATGCAAATCTTCGTGAAAACTCTCACTGGAAAAACCATTACCCTTGAAGTCGAGGCCTC 341462 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || ||| | | ||| ||||| ||||| || ||||| |||||||| ||||| Sbjct 341463 AGACACTATAGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCA 341522 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||| |||| || | || ||||| | |||||||||||||| | | ||||| || Sbjct 341523 ACAACGTCTAATCTTTGCTGGTAAACAGTTGGAAGATGGAAGAACCCTTTCCGATTACAA 341582 Query 391229 TAT 391231 || Sbjct 341583 CAT 341585 Score = 98.7 bits (108), Expect = 4e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || ||||| || ||||| |||||||| |||||||||||| |||| || | || ||| Sbjct 341906 AAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAACAACGTCTAATCTTTGCTGGTAAA 341965 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 || | ||||||||||||||| | | ||||| || || | || || | ||||| || Sbjct 341966 CAGTTGGAAGATGGAAGAACTCTTTCTGATTACAACATCCAGAAAGAATCCACACTACAT 342025 Query 391254 TTAGTATTAAGACT 391267 ||||| || ||||| Sbjct 342026 TTAGTTTTGAGACT 342039 >seq160 Length=383029 Score = 109 bits (120), Expect = 2e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || || || ||||| ||||| | || || ||| | || Sbjct 143053 ATGCAAATCTTTGTCAAAACTCTAACCGGCAAAACCATTACCTTGGAAGTCGAAGCGTCC 143112 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||||| | ||| |||||||| |||||||||||||||||||| || || Sbjct 143113 GATACCATTGAAAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGACCAG 143172 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || ||||| || ||||| ||| | || ||| | || || ||| Sbjct 143173 CAGAGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGACTACAAT 143232 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTA 391259 || | || || |||| || || || ||| Sbjct 143233 ATCCAGAAAGAATCAACTCTACATTTGGTA 143262 Score = 100 bits (110), Expect = 1e-15 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || ||||| || |||||||| || ||||| || || ||| | || Sbjct 144193 ATGCAAATATTCGTCAAGACACTCACAGGTAAAACCATCACTCTGGAGGTCGAAGCGTCG 144252 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | ||| ||||| || ||||| |||||||||||||| ||||| Sbjct 144253 GACACCATCGAGAATGTCAAAGCCAAAATACAGGATAAAGAAGGAATTCCTCCGGATCAG 144312 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || ||| | || || || || || || ||| | || || |||| || || Sbjct 144313 CAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTCGGACTACAAC 144372 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTA 391259 || | || || |||| || || || ||| Sbjct 144373 ATCCAGAAAGAATCAACTCTACATTTGGTA 144402 Score = 95.1 bits (104), Expect = 5e-14 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || || || ||||| || || | || || || | || Sbjct 143965 ATGCAGATCTTNGTCAAAACTCTNACCGGNAAAACAATCACANTGGAAGTCGAGGCGTCC 144024 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| |||| |||||||| |||||||||||||||||||| ||||| Sbjct 144025 GACACAATTGAGAACGTTAAGGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAG 144084 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || ||| | || || || || || || ||| | || ||| |||| || || Sbjct 144085 CAAAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACATTGTCGGACTACAAC 144144 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 || | ||||| | || | || ||||| || || || Sbjct 144145 ATCCAGAAGGAATCTACTTTGCATTTAGTCTTGAGGCT 144182 Score = 93.3 bits (102), Expect = 2e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || ||||| ||||| || || ||||| | || || || | ||| Sbjct 142825 ATGCAGATTTTTGTAAAGACACTTACTGGCAAGACCATTACCTTGGAAGTAGAGGCGTCT 142884 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | || ||||| |||||||||||||||||||| || || || Sbjct 142885 GATACGATTGAGAACGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCAGACCAG 142944 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || ||||| || ||||| ||| | || ||| | ||||| || Sbjct 142945 CAGAGATTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTACAAC 143004 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 143005 ATCCAGAAGGA 143015 Score = 93.3 bits (102), Expect = 2e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || || || ||||| || || | || || || | ||| Sbjct 143509 ATGCAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCT 143568 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || ||||| |||||||| |||||||||||||| ||||| Sbjct 143569 GACACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGATCAG 143628 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || |||||||| ||||| ||| | || ||| | || || ||| Sbjct 143629 CAGAGGTTGATCTTTGCTGGTAAACAACTCGAAGACGGACGCACATTGTCAGACTACAAT 143688 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 143689 ATCCAAAAGGA 143699 Score = 93.3 bits (102), Expect = 2e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || || || ||||| || || | || || || | || Sbjct 143737 ATGCAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCC 143796 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| |||| |||||||| |||||||||||||||||||| ||||| Sbjct 143797 GACACAATTGAGAACGTTAAGGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAG 143856 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || || | || ||||| || ||||| ||| | || ||| | || || ||| Sbjct 143857 CAAAGATTGATCTTTGCTGGTAAACAGCTCGAAGACGGACGCACATTGTCAGACTACAAT 143916 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 143917 ATCCAAAAGGA 143927 Score = 91.5 bits (100), Expect = 6e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || || || ||||| || || || || || || | ||| Sbjct 143281 ATGCAGATCTTTGTCAAAACTCTCACCGGCAAAACAATCACACTGGAAGTCGAGGCGTCT 143340 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || ||||| |||||||| |||||||||||||| || || Sbjct 143341 GACACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGACCAG 143400 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || ||||| || ||||| ||| | || ||| | ||||| || Sbjct 143401 CAGAGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTACAAC 143460 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTA 391259 || | || || |||| || || || ||| Sbjct 143461 ATACAGAAAGAATCAACTCTACATTTGGTA 143490 >seq61 Length=808599 Score = 96.9 bits (106), Expect = 1e-14 Identities = 169/242 (70%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 451363 GCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422 ||| ||||||||||| || ||| || ||||| | ||| | | ||||| || || Sbjct 82744 GCAGGCAACTAAAGACGCTGGAACAATCTCTGGTCTGGTTGTAATGAGGATTATCAACGA 82685 Query 451423 ACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaa 451482 ||| || || ||||| | ||||| || ||| ||| ||||| | || ||||| Sbjct 82684 ACCAACCGCCGCTGCAATCGCATACGGTTTAGACAAA---AAAGAC---GGCGAGAAAAA 82631 Query 451483 TATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATA-CTTCTGTACTTTCAATTGAAG 451541 | | |||||||| || ||||| || ||| ||| | || ||||| | ||||| Sbjct 82630 CGTGCTGGTATTTGACTTGGGTGGTGGTACTTTCGATGTCAGCT-TACTTACTATTGACA 82572 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601 | || |||||||||||| || || |||||||| |||||||| ||||| |||||| | | Sbjct 82571 ACGGCGTATTTGAAGTAGTCGCTACTAATGGTGACACTCATCTGGGAGGCGAAGATTTCG 82512 Query 451602 AT 451603 || Sbjct 82511 AT 82510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975552442124048