Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq371 385 4e-101 seq3 215 4e-50 seq36 107 1e-17 >seq371 Length=115487 Score = 385 bits (426), Expect = 4e-101 Identities = 912/1366 (67%), Gaps = 10/1366 (1%) Strand=Plus/Minus Query 517163 GCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATA 517222 ||||| | | |||||||||||| | |||| || |||| || | || ||||| Sbjct 14987 GCTTCGTTCACCATTCTCTCAATATCTTCTTTCGACAATCGACCCTTGTCGTTGGTAATT 14928 Query 517223 GTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTG 517282 || || || || ||| || ||||| || |||| || || || ||||| ||| Sbjct 14927 GTGATCTTGTTTTCTTTACCCGTAGATTTCTCGATCGCAGAGACGTTTAGTATACCGTTG 14868 Query 517283 GCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCT 517342 ||||| | ||| || |||||||||||||| || || ||||| | || ||||| || || Sbjct 14867 GCATCAATATCGAAGGTGACTTCAATTTGTGGCACACCTCTAGGCGCCGGTGGTATTCCC 14808 Query 517343 TCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAA 517402 || | ||| | || ||| | || |||||||| || | || ||| |||||| | Sbjct 14807 GTTAATTCGAATTTGCCAAGAATGTTGTTATCTTTGGTCATCGCTCTTTCTCCCTCGTAG 14748 Query 517403 ATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTA 517462 | ||||||| ||| | | |||||| || ||||| || || ||| | | | || Sbjct 14747 ACTTGGATAAGTACTCCCGGTTGATTGTCGGAATATGTGGTGAATGTTTGCGTCTGCTTT 14688 Query 517463 CAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAA 517522 ||| || || ||||| || | ||| | | ||||||| | ||| || || || || | Sbjct 14687 GTAGGTATCGTGGTGTTCCTCTTAATCAGAGTGGTCATGACACCGCCAGCGGTCTCAATT 14628 Query 517523 CCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGA 517582 || | || || || || || || | || | | || ||||| || ||| | | Sbjct 14627 CCCAACGACAGTGGGGTCACGTCCAGCAGAAGCAGATCTTGAACTTCTTCGGACTTGTCG 14568 Query 517583 CCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACA 517642 ||| ||||| || || |||| ||| || || || |||||||| ||||| ||||| | | Sbjct 14567 CCATGCAGAATCGCCGCCTGAACAGCTGCGCCGTAAGCAACAGCCTCATCCGGATTGATA 14508 Query 517643 GTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAAT 517701 | || || | || || || || || |||| | |||||| | ||| | ||| || || Sbjct 14507 GATTTGTTCAATTCCTTGCCGTTAAAGAAATCTTGAAGAAGCT-TCTGAATCTTTGGTAT 14449 Query 517702 ACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATC 517761 | | || || || |||| || || |||||||| | || |||| |||| || Sbjct 14448 CCTGGTAGAGCCGCCGACTAGAACGATGCTGTGCACCTGAGCCTTGTCCATCTTTGCGTC 14389 Query 517762 CAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTC 517821 | | || || |||||||| ||| ||| |||| || | |||||||| || Sbjct 14388 TCTGAGTGCCTTCTCTACGGGTTCGAGAGTGCTTCTGAACAGATCGGCGCAAAGTTCCTC 14329 Query 517822 GAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACT 517879 |||| | || || || || ||| | || || ||||| || || |||| ||||||| Sbjct 14328 GAATCTGGCCCTGGT--GATGGACGTGTAGAAATCAATGCCCTCAAACAGCGAATCAATC 14271 Query 517880 TCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTT 517939 || || | | ||| || || || | || | || || | ||||| |||||||| Sbjct 14270 TCGATGCTCGCTTGCGTTGATGAGCTCAATGTTCTCTTTGCTCTCTCACAGGCTGTCCTC 14211 Query 517940 AGTCTTCGTAAGGCTTT-TGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATC 517998 || | || | ||| | | | | || | |||||| |||| |||||||||||||| || Sbjct 14210 AGACGTCTCAGAGCTCTCTTGTTAGTGCT-CAAATCCTTTTTGTATTTTCTCTTGAATTC 14152 Query 517999 TTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCC 518058 || ||| | | || | ||||||||||| ||||| || || | | || | || Sbjct 14151 TTGTACAAAGTGATTCACCATTCGATTATCAAAGTCTTCTCCGCCAAGATGCGTGTCGCC 14092 Query 518059 TGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGT 518118 | || | | | |||| || | ||||| || | | ||| | | ||||||| ||| Sbjct 14091 AGCTGTGGATTTCACTTCAAAGATGCCATCCTCGATTGTCAAGATTGATACATCAAAGGT 14032 Query 518119 TCCACCACCCATATCAAAAATAAGTACATTCATTTCTT-TGTCTTGGTTTTTATCAAGAC 518177 || || |||| ||||| || || |||||| |||| || | || |||||||| | Sbjct 14031 GCCTCCGCCCAAGTCAAAGATCAGAACATTCTTTTCGCCTGAAGTC-TTCTTATCAAGGC 13973 Query 518178 CATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAA 518237 |||| || | ||||| || || ||||| || || || || | |||||| |||||||||| Sbjct 13972 CATATGCTATTGCAGCCGCTGTCGGTTCGTTTATTATCCTGAGAACATTGAGACCAGCAA 13913 Query 518238 TTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAA 518297 | || ||||| || || |||||||| || || ||||| || || ||||| ||||||| Sbjct 13912 TAGCGCCAGCATCCTTTGTTGCTTGTCTCTGAGAGTCGTTGAAGTAGGCAGGCACAGTAA 13853 Query 518298 TAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTA 518357 |||| |||| ||||| | ||| |||| ||| || || || | ||||||||| ||| Sbjct 13852 TAACAGCATTTGTTACATTTTTGCCAAGATATGCTTCGGCTGTCTCTTTCATTTTTGTTA 13793 Query 518358 AAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTT 518417 ||| ||| || |||| || ||| ||| || | || | |||| | |||||||||| Sbjct 13792 AAACCATGGAAGAAACTTCTTCGGGGAAAAAGGTTTTTGTTTCACCCTTGTATGATACTT 13733 Query 518418 CAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATT 518477 | | |||||| || |||| | || |||| ||||||| |||||| || || Sbjct 13732 TGATCTTTGGTTTGCCTGCATCATTCACTACCGTAAACGGCCAGTGTTTCATGTCACTTT 13673 Query 518478 GAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 518523 | || || |||| ||| | |||||||| ||||||||||| Sbjct 13672 GCACCGTTGCATCATCAAATCGACGACCAATTAGACGTTTTGCATC 13627 >seq3 Length=1948392 Score = 215 bits (238), Expect = 4e-50 Identities = 704/1076 (65%), Gaps = 26/1076 (2%) Strand=Plus/Plus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 || |||||||| |||| | || || |||||||| |||||||| | ||| || ||||| Sbjct 422049 GTAGATTTATCCACGGCGGATACGTTGAGAATACCGTTGGCATCGATATCGAAGGTGACC 422108 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 517363 || || || || || || | | || ||||| || || | | || | || ||| Sbjct 422109 TCGATCTGGGGAACTCCGCGAGGCGCGGGTGGAATGCCGCTGAGTTCGAACTTACCAAGA 422168 Query 517364 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACA--- 517420 || || || || || | | |||||||| ||| ||| |||||| ||| |||| Sbjct 422169 AGGTTGTTGTCCTTGGTCATTGCGCGTTCACCTTCGTAAACTTGGAT--TAA-TACACCC 422225 Query 517421 GTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACA-AGGAATTGTTGTGTT 517479 | |||||| || | ||||| ||||| |||| ||| || | |||||| || || || Sbjct 422226 GGTTGATTGTCGGCGTAAGTCGTAAAGG-TCTGCGTTTGTTTCGTAGGAATGGTAGTATT 422284 Query 517480 TCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGT 517539 || | |||| ||||| | ||| ||||| || || | ||||||||| || ||||| Sbjct 422285 CCTTTTGATAAGCGCAGTCATGACACCGCCTGCAGTCTCAATACCAAGAGACAGCGGAGT 422344 Query 517540 GACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACA---AGAATAGC 517596 ||||| | |||| | || || | || | |||| || | | | || ||||| Sbjct 422345 AACATCGAGCAGGAGCAGATCCTGCACTT---CCTCAGATTTATCTCCGTGCAGGATAGC 422401 Query 517597 TGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTT 517656 ||| |||| || || || ||||| ||||| ||||||||||| | | | || | || Sbjct 422402 TGCCTGAACGGCTGCTCCGTATGCTACAGCCTCATCAGGATTGATGGACTTGTTCAATTC 422461 Query 517657 TTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTC 517715 ||||||||||||||| | || | || || | | ||| || ||||| | ||| || | Sbjct 422462 TTTACCATTGAAAAAGTCCTGTAGCAATTTCT-GAATCTTGGGGATACGGGTTGAACCGC 422520 Query 517716 CAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTT 517775 | || || || || ||||| | ||| | |||||||| ||| | || || ||| | Sbjct 422521 CGACCAAGACGATGTCATGTATCTGCGCTTTATCCATTTTAGCGTCGCGCAACGATTTCT 422580 Query 517776 CAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAG 517835 |||||||||| || | | || | || | ||||| |||||||| || | | Sbjct 422581 CAACGGGTTCGAGGGTACCGCGGAAGAGATCGGCGCAAAGCTCTTCGAAACGCGCCCGGG 422640 Query 517836 TAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAG 517895 ||| | || | || ||||| || ||| ||||| | || || | | ||| | Sbjct 422641 TAATGGATGTATAGAAGTCGATTCCCTCATACAGCGAATCGATCTCGATACTGGCTTGCG 422700 Query 517896 TCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT 517955 | || || || |||| ||| || || || || || ||||| | | | || | || Sbjct 422701 TAGACGACGACAGTGTACGCTTCGCGCGCTCGCACGCTGTACGCAAACGACGGAGAGC-- 422758 Query 517956 TTGCTGATT-GA-TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAAC-ACACCATG 518012 ||| ||| || ||| |||| | |||||||| | ||||| || | || | | || Sbjct 422759 ACGCTTATTCGAGGTCAGATCTTTCTTATATTTACGTTTGAATTCCTGTACGAAATGAT- 422817 Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072 | || | ||| || ||||| || || || ||||| | || | || | |||| | | Sbjct 422818 TGACCATACGGTTGTCAAAGTCCTCGCCACCCAAGTGGGTGTCACCAGCTGTAGACTTGA 422877 Query 518073 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132 | | ||| | ||||| || | || || | | || ||| || |||||||| | || Sbjct 422878 CCTCGAAGATGCCATCCTCGATAGTCAGGATGGACACGTCAAAAGTGCCACCACCGAGAT 422937 Query 518133 CAAAAATAAGTACATTCATTTCTTTGTCTTGG--TTTTTATCAAGACCATACGCAAAAGC 518190 |||| ||||| || || || | ||| ||||||||||| || ||||||| || Sbjct 422938 CAAAGATAAGGACGTT--ACGCTCGCCCGTGGCCTTTTTATCAAGGCCGTACGCAATTGC 422995 Query 518191 AGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATC 518250 || || || || || ||||| || | || ||||| | || | || | || || || Sbjct 422996 GGCGGCGGTGGGCTCGTTAATGATACGTAATACATTCAAGCCCGAGATGGTACCAGCGTC 423055 Query 518251 TTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || || || | || || ||||| || || ||||| || || || || |||| Sbjct 423056 CTTCGTTGCCTGACGCTGCGAGTCGTTGAAGTAGGCAGGGACGGTGATCACTGCAT 423111 >seq36 Length=1033973 Score = 107 bits (118), Expect = 1e-17 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 870800 ATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCA 870859 ||||| || | |||| ||| || |||||||| ||||||| |||||||| | || || Sbjct 1001466 ATTGTAGACTTTTCTAGTCCCAACATTGCTAAGCAAATGCACGTTGGACATCTGAGGTCT 1001525 Query 870860 ACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGT 870919 ||||| || || || ||||| |||| |||||||| | || ||| |||| | | Sbjct 1001526 ACTATAATCGGCGACAGTATTTCTAGGTTATTAGAATATTTAGGCCACAATGTGTTGAGG 1001585 Query 870920 ATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 870966 || ||||| || || |||||||| || || || |||||||||||||| Sbjct 1001586 ATCAATCACGTAGGCGATTGGGGCACGCAGTTTGGTATGTTAATTGC 1001632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780497069684536