Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq371 365 6e-96 seq3 336 3e-87 seq61 107 2e-18 seq8 87.8 2e-12 >seq371 Length=115487 Score = 365 bits (404), Expect = 6e-96 Identities = 885/1334 (66%), Gaps = 12/1334 (1%) Strand=Plus/Minus Query 6509 TTCATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTA-CTT 6567 ||||| | | | ||||| |||||| | ||||| || | ||| | | | ||| || Sbjct 15071 TTCATGTTAAAGCAGTACGACTCGAGAGCGTTCTTGGCGGCAACCCTAT-CTCGTTGCTG 15013 Query 6568 TTCATCTTC--ATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTC 6625 ||||||||| ||| ||| || || || || | ||||| | ||||| ||||||||| Sbjct 15012 TTCATCTTCCGATCGGTAT--TTCTCGGCTTCGTTCACCATTCTCTCAATATCTTCTTTC 14955 Query 6626 GATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCT 6685 || |||| ||||| || || ||||| || ||||| | |||||||| | || || Sbjct 14954 GACAATCGACCCTTGTCGTTGGTAATTGTGATCTTGTTTTCTTTACCCGTAGATTTCTCG 14895 Query 6686 TCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGT 6745 ||| || || | ||||| || ||||||| |||||| | || | ||||||||| Sbjct 14894 ATCGCAGAGACGTTTAGTATACCGTTGGCATCAATATCGAAGGTGACTTCAATTTGTGGC 14835 Query 6746 GTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCC 6805 ||| || || || | ||| || |||||||| || ||| | ||||| | ||||||| Sbjct 14834 ACACCTCTAGGCGCCGGTGGTATTCCCGTTAATTCGAATTTGCCAAGAATGTTGTTATCT 14775 Query 6806 GTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGT 6865 | | | || | ||| || || ||||||| || || | |||||||| || Sbjct 14774 TTGGTCATCGCTCTTTCTCCCTCGTAGACTTGGATAAGTACTCCCGGTTGATTGTCGGAA 14715 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 || | ||| |||| | ||| | || ||||| || || ||| ||| | | | Sbjct 14714 TATGTGGTGAATGTTTGCGTCTGCTTTGTAGGTATCGTGGTGTTCCTCTTAATCAGAGTG 14655 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | ||| || || || | ||| | ||||| || |||||||||| || | | Sbjct 14654 GTCATGACACCGCCAGCGGTCTCAATTCCCAACGACAGTGGGGTCACGTCCAGCAGAAGC 14595 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || |||||||| |||| | || || | || || || || || | || ||| Sbjct 14594 AGATCTTGAACTTCTTCGGACTTGTCGCCATGCAGAATCGCCGCCTGAACAGCTGCGCCG 14535 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||| || || || | ||| |||| ||| || |||||||| |||| Sbjct 14534 TAAGCAACAGCCTCATCCGGATTGATAGATTTGTTCAATTCCTTGCCGTTAAAGAAATCT 14475 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | | | ||||| || || || | || || || ||||| | |||||| | | Sbjct 14474 TGAAGAAGCTTCTGAATCTTTGGTATCCTGGTAGAGCCGCCGACTAGAACGATGCTGTGC 14415 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 || | | || || ||||||| ||||| |||| || || || ||||| | | | Sbjct 14414 ACCTGAGCCTTGTCCATCTTTGCGTCTCTGAGTGCCTTCTCTACGGGTTCGAGAGTGCTT 14355 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 | ||||| || || |||||||| || | || | ||| ||||| || ||||||||| Sbjct 14354 CTGAACAGATCGGCGCAAAGTTCCTCGAATCTGGCCCTGGTGATGGACGTGTAGAAATCA 14295 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAACGTT 7342 | ||| || | | ||||||||| || ||| | | ||| ||| || || || ||| Sbjct 14294 ATGCCCTCAAACAGCGAATCAATCTCGATGCTCGCTTG---CGTTGATGAGCTCAATGTT 14238 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 | |||||| | |||||| || || | | ||| | || || | | |||| | | | Sbjct 14237 CTCTTTGCTCTCTCACAGGCTGTCCTCAGACGTCTCAGAGCTCTCTTGTTAGTGCTCAAA 14178 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462 || || || | ||| | || || |||| ||||| | | || ||| || Sbjct 14177 TCCTTTTTGTATTTTCTCTTGAATTCTTGTACAAAGTGATTCACCATTCGATTATCAAAG 14118 Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 ||||| || || | || || || || || || | ||| ||||||||||| || | || Sbjct 14117 TCTTCTCCGCCAAGATGCGTGTCGCCAGCTGTGGATTTCACTTCAAAGATGCCATCCTCG 14058 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 || | || | || |||||||| || || || |||| |||||| || || || ||| | Sbjct 14057 ATTGTCAAGATTGATACATCAAAGGTGCCTCCGCCCAAGTCAAAGATCAGAACATTCTTT 13998 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 ||| | | |||||||| || || || || || || ||||| || ||||| || || Sbjct 13997 TCGCCTGAAGTCTTCTTATCAAGGCCATATGCTATTGCAGCCGCTGTCGGTTCGTTTATT 13938 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 || | ||| || || |||||||||| | ||||| || || ||||||| || || Sbjct 13937 ATCCTGAGAACATTGAGACCAGCAATAGCGCCAGCATCCTTTGTTGCTTGTCTCTGAGAG 13878 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||||| || || || | || || | || || || || || ||||| | | Sbjct 13877 TCGTTGAAGTAGGCAGGCACAGTAATAACAGCATTTGTTACATTTTTGCCAAGATATGCT 13818 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | ||||||||||| || | |||||| || |||| ||||| | ||| | Sbjct 13817 TCGGCTGTCTCTTTCATTTTTGTTAAAACCATGGAAGAAACTTCTTCGGGGAAAAAGGTT 13758 Query 7823 TTCGTTTCACCGTT 7836 || |||||||| || Sbjct 13757 TTTGTTTCACCCTT 13744 >seq3 Length=1948392 Score = 336 bits (372), Expect = 3e-87 Identities = 872/1316 (66%), Gaps = 26/1316 (2%) Strand=Plus/Plus Query 6509 TTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTT 6567 ||||| |||| | ||||| ||||| || ||||| ||| ||| | | | | | ||| Sbjct 421884 TTCATGTTGA-AGCAGTAAGACTCGAGGCCGTTCTTGGCCGCGATCGTCTCCTTTTGCTT 421942 Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 ||| || || |||||| || || || | ||||| | || || || || || Sbjct 421943 TTCGTCCTCGCTGCGATACTTCTCGGCTTCGTTTACCATTCTCTCGATATCCTCCTTGCT 422002 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | || || || || || || || ||||| | |||||| | | ||||| | Sbjct 422003 GAGACGACCTTTGTCGTTTGTGATGGTGATCTTATTCTCTTTACCGGTAGATTTATCCAC 422062 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || ||| || | |||||| || ||||| | |||||| | || | || || || Sbjct 422063 GGCGGATACGTTGAGAATACCGTTGGCATCGATATCGAAGGTGACCTCGATCTGGGGAAC 422122 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 || | || |||| |||||| || | | || || ||||||| | |||| ||| | Sbjct 422123 TCCGCGAGGCGCGGGTGGAATGCCGCTGAGTTCGAACTTACCAAGAAGGTTGTTGTCCTT 422182 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGC 6867 | | | ||||||||||| || |||| ||| || | |||||||| || Sbjct 422183 GGTCATTGCGCGTTCACCTTCGTAAACTTGGATTAATACACCCGGTTGATTGTCGGCGTA 422242 Query 6868 CGTTGAGAAGATTTG---TTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 || | ||| | || || |||| ||| |||| || ||||| || |||| || Sbjct 422243 AGTCGTAAAGGTCTGCGTTTGTTTCGTAG---GAATGGTAGTATTCCTTTTGATAAGCGC 422299 Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 ||||| | ||| || ||| || | ||||||||||| || || || || | || | Sbjct 422300 AGTCATGACACCGCCTGCAGTCTCAATACCAAGAGACAGCGGAGTAACATCGAGCAGGAG 422359 Query 6985 CAGGTCTTGAACAGATTCGTTCCCTTCACC--CGTTAAG-ATGGCGGCTTGGACCGTCGC 7041 ||| || || || ||| | || | | ||| || || || || || || | || Sbjct 422360 CAGATCCTGCAC---TTCCTCAGATTTATCTCCGTGCAGGATAGCTGCCTGAACGGCTGC 422416 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101 |||||||| || |||||||| || || || | || |||| ||||||||| || ||| | Sbjct 422417 TCCGTATGCTACAGCCTCATCAGGATTGATGGACTTGTTCAATTCTTTACCATTGAAAAA 422476 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 ||| || || || ||||| || ||||| || || || || |||||||| ||||| || Sbjct 422477 GTCCTGTAGCAATTTCTGAATCTTGGGGATACGGGTTGAACCGCCGACCAAGACGATGTC 422536 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---T 7218 || | | || |||||| || || | ||| || | | ||| || || ||||| | | Sbjct 422537 ATGTATCTGCGCTTTATCCATTTTAGCGTCGCGCAACGATTTCTCAACGGGTTCGAGGGT 422596 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 || ||||| | || || || || || ||||| || ||||||||||||||||| Sbjct 422597 ACCG---CGGAAGAGATCGGCGCAAAGCTCTTCGAAACGCGCCCGGGTAATGGATGTATA 422653 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338 ||| || | || || || | |||||| || || || | | ||| | | ||| || | Sbjct 422654 GAAGTCGATTCCCTCATACAGCGAATCGATCTCGATACTGGCTTGCGTAGACGACGACAG 422713 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || ||||| |||||||| ||||| || || |||||||| || |||||| || || Sbjct 422714 TGTACGCTTCGCGCGCTCGCACGCTGTACGCAAACGACGGAGAGCACGCTTATTCGAGGT 422773 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 | ||||||||||| ||||||||| || || | ||| || | | | || Sbjct 422774 CAGATCTTTCTTATATTTACGTTTGAATTCCTGTACGAAATGATTGACCATACGGTTGTC 422833 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 || || || ||||||||||| || || || || || | ||||| || ||||| || | Sbjct 422834 AAAGTCCTCGCCACCCAAGTGGGTGTCACCAGCTGTAGACTTGACCTCGAAGATGCCATC 422893 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 || || | | | || || ||||| || |||||||| || ||||| || || ||||| Sbjct 422894 CTCGATAGTCAGGATGGACACGTCAAAAGTGCCACCACCGAGATCAAAGATAAGGACGTT 422953 Query 7579 CGTATCGTCGTCTTTG--TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | | | | || ||||| || |||||||| || || || || || || || Sbjct 422954 ACGCTCGCC--CGTGGCCTTTTTATCAAGGCCGTACGCAATTGCGGCGGCGGTGGGCTCG 423011 Query 7637 TTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 ||||| ||||| || ||| |||| ||| | || || | || || ||||| || || || Sbjct 423012 TTAATGATACGTAATACA-TTCAAGCCCGAGATGGTACCAGCGTCCTTCGTTGCCTGACG 423070 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||||| ||||| |||||||| ||||| || | || || | | || ||| || || Sbjct 423071 CTGCGAGTCGTTGAAGTAGGCAGGGACGGTGATCACTGCATTGCTTACAGACTTGCCCAG 423130 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 || | ||||||| | || ||||| ||| | |||||||| | |||||||| Sbjct 423131 GTATGCTTCCGCGGTCTCCTTCATCTTGACCAAGACCATCGAACTCACCTCTTCAG 423186 Score = 105 bits (116), Expect = 8e-18 Identities = 140/191 (73%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 7964 GTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTA 8023 ||||| |||||||||||||| ||||| || || || || ||||| ||||| ||| | Sbjct 423864 GTGTTGTTGGGGTTCATGGCGACCTGGTTTTTGGCGGCATCTCCGATGAGACGCTCAGT- 423922 Query 8024 TTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAAT 8082 |||||| || || ||||| | |||| ||||| ||||| || || || || || || || Sbjct 423923 --TTCCGTGAAGGCCACGTA-GCTGGGCGTCGTGCGATTACCCTGATCATTTGCGATGAT 423979 Query 8083 TTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACC 8142 || || | ||| ||| ||||||||||||| || || || || || | ||| || || Sbjct 423980 CTCGACTTTGCCGTGTTGGAAGACGCCGACGCAAGAGTAGGTCGTGCCCAGATCGATTCC 424039 Query 8143 GATTGCTTGAG 8153 | |||| ||| Sbjct 424040 CACTGCTGGAG 424050 >seq61 Length=808599 Score = 107 bits (118), Expect = 2e-18 Identities = 211/312 (68%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 6571 ATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAA 6630 ||| ||||| | ||||||||||||| | || ||| || || || || || ||| Sbjct 81424 ATCGTCATCAGCAAACTTTTCCGCATCCTTGATCATTCGCTCGATATCATCGGGCGTTAA 81483 Query 6631 TCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGC 6690 | || |||||| || || ||||||||| ||||| | | ||||||||||||| Sbjct 81484 GCGATTCTGATCATTTGTGATGACAATCTTTTCACGGTTACCGGTGCCCTTATCTTCAGC 81543 Query 6691 ACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACC 6750 ||| | || || || || ||||| | ||||| | || | ||||| ||| | || Sbjct 81544 CGATACCTGCATGATGCCGTTAGCATCGATCTCGAATGTGACTTCGATTTGCGGTATGCC 81603 Query 6751 CCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGC 6810 | ||||| | ||||| || || |||||||| | ||||||| | || ||| | | Sbjct 81604 TCGTGGTGCCGGCGGAATGCCAGTCAAATCAAACTTGCCAAGTAGATGATTGTCCTTGGT 81663 Query 6811 CTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGT 6870 | | ||| || ||||| || |||| |||||| || | |||| |||| ||||| Sbjct 81664 CATAGGACGCTCGCCTTCGTACACTTGAATTGTAACGGTGTGTTGGCTATCGGAGGCCGT 81723 Query 6871 TGAGAAGATTTG 6882 ||||| ||||| Sbjct 81724 GGAGAATATTTG 81735 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| || |||| || || || || || || |||||||| | || Sbjct 82510 ATCGAAATCTTCGCCTCCCAGATGAGTGTCACCATTAGTAGCGACTACTTCAAATACGCC 82569 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 ||||| | | || ||||| || ||||||||||||| |||||| | || || Sbjct 82570 GTTGTCAATAGTAAGTAAGCTGACATCGAAAGTACCACCACCCAAGTCAAATACCAGCAC 82629 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| | ||| ||||| || || || | |||||| ||||| || || || |||||||| Sbjct 82630 GTTTTTCTCGCCGTCT---TTTTTGTCTAAACCGTATGCGATTGCAGCGGCGGTTGGTTC 82686 Query 7636 ATTAATAAT 7644 || ||||| Sbjct 82687 GTTGATAAT 82695 >seq8 Length=1703481 Score = 87.8 bits (96), Expect = 2e-12 Identities = 85/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 22431 AAAAA--CGTGTAAATTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAA 22488 ||||| |||| | ||||||||| ||||| ||||| |||||||| ||||| || ||| Sbjct 719709 AAAAATCCGTG-AGATTTTATCACGCATCAACATCTGAGCTCTATGGTAATGTGGTGGAA 719651 Query 22489 ACTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGG 22535 |||||| |||||||| ||||| ||||| || | ||||||||||| Sbjct 719650 GTTCCACAGAATGAAAAAACACCATTTTATCCAAGATCACCATATGG 719604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635080750867040