Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq150 163 6e-35 seq160 136 9e-27 seq239 131 4e-25 >seq150 Length=403005 Score = 163 bits (180), Expect = 6e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||||||||||||||| ||||| ||||| || || |||||||||| ||| ||||| ||||| Sbjct 341388 CAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAAAGGGTTCTTCCATC 341329 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| || |||||||| || || || | || || || || |||||||| ||||||||||| Sbjct 341328 TTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCTTCTTTGTC 341269 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||||| ||| || || || ||||| || ||| ||| ||||| | || | || Sbjct 341268 CTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACTTCCAAAGTGATGGT 341209 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||||||||| || | ||||| Sbjct 341208 TTTCCCAGTAAGAGTTTTTACAAAGATCTGCAT 341176 Score = 159 bits (176), Expect = 8e-34 Identities = 145/183 (79%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 194959 ATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGT 195018 || |||||||||| ||| ||||| |||||||| | ||| ||||| || ||||| || ||| Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526 Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 ||||| || ||||||||||||||||||||||| ||||| || || || || || ||| Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTG 341466 Query 195079 TCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGC 195138 || || || ||||||||||||| || ||||| || | |||||| ||||| | |||| Sbjct 341465 TCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGC 341406 Query 195139 ATT 195141 ||| Sbjct 341405 ATT 341403 Score = 138 bits (152), Expect = 3e-27 Identities = 111/134 (83%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||||||| | || || ||||| ||||| || || |||||||| | ||||||||| Sbjct 342039 AGTCTCAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAAAGAGTTCTT 341980 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | ||| ||||| || ||||| || |||||||| || ||||||||||||||| Sbjct 341979 CCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGAATGCCTTCT 341920 Query 195043 TTGTCTTGAATTTT 195056 |||||||| || || Sbjct 341919 TTGTCTTGGATCTT 341906 >seq160 Length=383029 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || ||| | || |||||||| ||||| || |||||||| || | || || | Sbjct 144638 AGTCGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGACAGTGTGCGT 144579 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || ||||||||||| || |||||||| | || |||||||| |||||||| |||||| Sbjct 144578 CCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGAATTCCTTCT 144519 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || ||||| ||||||||||||||| ||||| || || ||||| | || Sbjct 144518 TTATCCTGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGACTTCCAATGTG 144459 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| || || | ||||| Sbjct 144458 ATTGTTTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 144421 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| || ||||| || |||||||| || | | || | || ||||||||||| Sbjct 143255 TGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCGAGCTGT 143196 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | | || |||||||||||||| ||||| || || |||||||| Sbjct 143195 TTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCTGAATTTTG 143136 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||||| |||||||| || || ||| ||||| | ||||| || || || || Sbjct 143135 GCTTTGACGTTTTCAATGGTATCGGACGCTTCGACTTCCAAGGTAATGGTTTTGCCGGTT 143076 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | |||||| Sbjct 143075 AGAGTTTTGACAAAGATTTGCAT 143053 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| || ||||| || || |||||||| | | || | || ||||||||||| Sbjct 143483 TGTAGAGTTGATTCTTTCTGTATGTTGTAATCTGACAATGTGCGTCCGTCTTCGAGCTGT 143424 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | | || |||||||||||||| |||||||| ||||| ||||| Sbjct 143423 TTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTGGATTTTG 143364 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| ||||| ||||| || || ||||| || || | || || || || Sbjct 143363 GCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGATTGTTTTGCCGGTG 143304 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | ||||| Sbjct 143303 AGAGTTTTGACAAAGATCTGCAT 143281 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| || ||||| || || ||||| || | || || | || || ||||||||| Sbjct 144395 TGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGACAGTGTGCGTCCGTCCTCGAGCTGC 144336 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| | || || || || |||||||| |||||||| || || ||||| Sbjct 144335 TTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTTATCCTGTATTTTG 144276 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| ||||| ||||||||||| ||| || || || || | || || ||||| Sbjct 144275 GCTTTGACATTCTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGATGGTTTTACCTGTG 144216 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 144215 AGTGTCTTGACGAATATTTGCAT 144193 Score = 122 bits (134), Expect = 2e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || | ||| || || ||||| |||||||| || | | || | || ||||||||||| Sbjct 143939 TGNANAGTNGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCGAGCTGT 143880 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| | || ||| || ||||||||||| ||||| || || |||||||| Sbjct 143879 TTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGAATTTTG 143820 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||||||||| ||||| || || ||||| | || | || || || || Sbjct 143819 GCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCAATGTGATTGTTTTGCCGGTT 143760 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | ||||| Sbjct 143759 AGAGTTTTGACAAAGATCTGCAT 143737 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 |||||| || || || || |||||||| | | || | || ||||||||||| || || Sbjct 143022 AGTGGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGTCCGTCTTCGAGCTGTTTTCC 142963 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || ||||| | || || |||||||| ||||| ||||| || ||||| ||||| ||| Sbjct 142962 AGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTT 142903 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||||||||| || || || || ||||| | ||||| ||||| || || | || Sbjct 142902 GACGTTCTCAATCGTATCAGACGCCTCTACTTCCAAGGTAATGGTCTTGCCAGTAAGTGT 142843 Query 195123 TTTTACGAACACTTGCAT 195140 ||||| || | ||||| Sbjct 142842 CTTTACAAAAATCTGCAT 142825 Score = 118 bits (130), Expect = 2e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || ||||| || | || | ||| || || || || || ||||| || | | || | Sbjct 144182 AGCCTCAAGACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGT 144123 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || ||||||||||| || |||||||| | || ||| || ||||||||||| ||||| Sbjct 144122 CCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCC 144063 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || |||||||| ||| ||||||||||| ||||| || || ||||| | || Sbjct 144062 TTATCCTGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCANTGTG 144003 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | |||||| || || | ||||| Sbjct 144002 ATTGTTTTNCCGGTNAGAGTTTTGACNAAGATCTGCAT 143965 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || || ||||| |||||||| || | | || | || |||||||| || ||||| Sbjct 143706 AGTAGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCGAGTTGTTTACC 143647 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || ||||| | | || || ||||||||||| |||||||| ||||| ||||| ||| Sbjct 143646 AGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTATCTTGGATTTTGGCCTT 143587 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||| ||||| ||||| || || ||||| | || | || || || || | ||| Sbjct 143586 GACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAATGTGATTGTTTTGCCGGTTAGAGT 143527 Query 195123 TTTTACGAACACTTGCAT 195140 ||| || || | ||||| Sbjct 143526 TTTGACAAAGATCTGCAT 143509 >seq239 Length=229837 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| || |||||||| || | ||||| | ||||| || |||||||| || ||||||| Sbjct 6124 CTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGA 6183 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | || || || || || || || || || || ||||||||||| || ||| || || | Sbjct 6184 TGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTTT 6243 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 |||| ||||| || |||||| |||||||||| ||||| || || | |||||| |||| Sbjct 6244 CAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACGA 6303 Query 195131 ACACTTGCAT 195140 | | ||||| Sbjct 6304 ATATCTGCAT 6313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109388404932452