Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq239 104 2e-17 seq150 104 2e-17 seq160 91.5 1e-13 >seq239 Length=229837 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||| || || ||||| || || | ||| |||| |||||||| || ||||| || | Sbjct 6124 CTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGA 6183 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | || || ||||| || | || | |||||||||||| |||||| || || | Sbjct 6184 TGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTTT 6243 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | || ||| || || || | ||| ||||| || ||||||||||| ||||| | Sbjct 6244 CAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACGA 6303 Query 34972 AGATCTGCAT 34981 | |||||||| Sbjct 6304 ATATCTGCAT 6313 >seq150 Length=403005 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 34800 ATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGT 34859 ||||| || || |||||| ||| | |||| |||| |||||| || ||||| ||||| ||| Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526 Query 34860 TGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT 34919 || || || | || | || || ||||| || || ||| || | |||| | Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTG 341466 Query 34920 TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGC 34979 || |||||| || || | ||| ||||||||||| |||||||| ||||| ||||| ||| Sbjct 341465 TCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGC 341406 Query 34980 AT 34981 || Sbjct 341405 AT 341404 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | |||||| | ||||| |||| ||||||||| ||||| || || | Sbjct 341404 TTCCTCCTCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGG 341345 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||||| ||| | |||| || || || || |||||||| || | || ||||| || | | Sbjct 341344 AAAGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAG 341285 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||| || || || | |||| | || || || | Sbjct 341284 GAATTCCTTCTTTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGA 341225 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || |||||||| || || ||||| || |||||||||||||| Sbjct 341224 CTTCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCAT 341176 >seq160 Length=383029 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | ||| ||| ||||| ||||| || || || | | ||| | || || Sbjct 143034 AACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGTCCGTCTTC 142975 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||||||||| ||||| || | || ||||||||| | || | || ||||| || Sbjct 142974 GAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTG 142915 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 || || |||||| | |||| ||| ||||| || || | ||| ||||| || Sbjct 142914 GATTTTAGCCTTGACGTTCTCAATCGTATCAGACGCCTCTACTTCCAAGGTAATGGTCTT 142855 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| ||||| |||||||| Sbjct 142854 GCCAGTAAGTGTCTTTACAAAAATCTGCAT 142825 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| || || ||||| || | | ||| | || || ||||||||||| ||||| Sbjct 143244 TTCTTTCTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAA 143185 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | ||||||||| | || | || ||||| || ||| || ||||||| Sbjct 143184 GATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTT 143125 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || || || || || | ||| |||||||| || || ||||| || || Sbjct 143124 TTCAATGGTATCGGACGCTTCGACTTCCAAGGTAATGGTTTTGCCGGTTAGAGTTTTGAC 143065 Query 34970 AAAGATCTGCAT 34981 |||||| ||||| Sbjct 143064 AAAGATTTGCAT 143053 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| || || || | | ||| | || || ||||||||||| ||||| Sbjct 143472 TTCTTTCTGTATGTTGTAATCTGACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAA 143413 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | ||||||||| | || | || || || || || || |||||| Sbjct 143412 GATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTGGATTTTGGCCTTGACGTT 143353 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| ||||| || || | || || ||||| || |||||||| || || Sbjct 143352 TTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGATTGTTTTGCCGGTGAGAGTTTTGAC 143293 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 143292 AAAGATCTGCAT 143281 Score = 84.2 bits (92), Expect = 1e-11 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | | |||||| || || || | || ||| ||||| ||||| |||||||| Sbjct 144191 CCTCCACGAAGCCTCAAGACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCCGAC 144132 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | ||| | || || ||||| |||||||| || || | || |||||| ||| | || Sbjct 144131 AATGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGAGGA 144072 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||| || || ||| | || | || ||||| || Sbjct 144071 ATTCCTTCCTTATCCTGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACT 144012 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || ||||| || || ||||| || || ||||||||||| Sbjct 144011 TCCANTGTGATTGTTTTNCCGGTNAGAGTTTTGACNAAGATCTGCAT 143965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324607661369568