Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq63 89.7 6e-13 >seq63 Length=804878 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||| ||| ||||| || || | |||| |||||||| ||||| | | | ||||||| Sbjct 4576 ATCTGTAATATATGTTTCAATGAGTAAAGAATACATTTCAGAATGGACAGTCTCTATAGT 4517 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343 |||||| ||||| | || || | | | ||| || || ||||| || Sbjct 4516 GGCCTGAAAGATATAAAAGAAATAGGCCTCAGGCAATTTTACCTCCTGGCAGAATCTCTC 4457 Query 19344 GACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAAT 19403 | |||||||||||||| || || ||| ||| ||||| |||||||||||||| || Sbjct 4456 AATTAAATTTTCATTAACAATCCCGTCAGAAGCAGCAAAGAATGCTAATACATGGGAGAT 4397 Query 19404 AAAATGTTTTTCAT 19417 ||||||| |||||| Sbjct 4396 AAAATGTCTTTCAT 4383 Score = 82.4 bits (90), Expect = 9e-11 Identities = 91/121 (75%), Gaps = 3/121 (2%) Strand=Plus/Minus Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 ||||||||||| ||||| || || ||| ||||||| || ||||||| ||| | |||| || Sbjct 4205 ACTTCTTCAACAGTCCAGAATGAGGCCACTGCTTTGTTGTACATGTCCCAAACATCAGGA 4146 Query 19522 TATTGTATAGGAAATATAACAAAT---CTATTTTTATTTTCTTTAAGAATAGGTTCCATT 19578 ||||| |||||||| || || | | || || |||| ||||| |||||| ||| Sbjct 4145 TATTGAATAGGAAAGATGTCATCTTCCCGATACGAATCCTCTTGAAGAAGAGGTTCTATT 4086 Query 19579 T 19579 | Sbjct 4085 T 4085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562062735183840