Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq239 116 3e-21 seq150 96.9 3e-15 >seq239 Length=229837 Score = 116 bits (128), Expect = 3e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||| || |||||||| ||||| ||| | || | || |||| |||||| ||||| || | Sbjct 6124 CTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGA 6183 Query 48637 TCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 | || ||||| ||||||| ||||| | ||||||||||| |||||| || ||| Sbjct 6184 TGAGACGCTGCTGATCCGGTGGGATC-CCCTCCTTGTCTTGAATCTTGGCCTTCACATTT 6242 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || || |||||||| | ||||| || || ||||| | |||||| || Sbjct 6243 TCAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACG 6302 Query 48756 AAAATCTGCATCGTGT 48771 || |||||||| |||| Sbjct 6303 AATATCTGCATGGTGT 6318 >seq150 Length=403005 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || | ||| || |||||||| ||| ||||| || || ||||||||||| Sbjct 342048 CCTCCCCGAAGTCTCAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAA 341989 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | || |||||||| ||||| ||||| || || || |||||||| | ||| Sbjct 341988 AGAGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGA 341929 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACA 48692 | ||| || ||||| ||||| ||||||| Sbjct 341928 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACA 341896 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | || || ||| ||||| || || |||||||| || || ||| Sbjct 341393 AGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAAAGGGTTCTT 341334 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||||||||||| |||| ||||| ||||| | |||| || || Sbjct 341333 CCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCTTCT 341274 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || || ||| | | | ||||| || || || |||| || Sbjct 341273 TTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACTTCCAAAGTG 341214 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | |||||||||||| |||||||| Sbjct 341213 ATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCAT 341176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380907162609588