Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq371 206 2e-47 seq3 131 1e-24 seq150 120 2e-21 seq239 98.7 6e-15 seq160 93.3 3e-13 >seq371 Length=115487 Score = 206 bits (228), Expect = 2e-47 Identities = 287/397 (72%), Gaps = 10/397 (3%) Strand=Plus/Plus Query 474518 GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGT 474577 ||||| ||| | | ||||||||| ||||||||| | || || ||| ||| ||| Sbjct 13627 GATGCAAAACGTCTAATTGGTCGTCGATTTGATGATGCAACGGTGCAAAGTGACATGAAA 13686 Query 474578 CATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCA--ATACACG 474635 || ||||| |||| ||| | |||| || || |||||| | || ||| | ||||| | Sbjct 13687 CACTGGCCGTTTACGGTAGTGAATGATGCAGGCAAACCAAAGATCAAAGTATCATACAAG 13746 Query 474636 CAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGA 474695 |||||||| ||| |||| || ||| || ||||||| ||||||||| | ||||||| Sbjct 13747 --GGTGAAACAAAAACCTTTTTCCCCGAAGAAGTTTCTTCCATGGTTTTAACAAAAATGA 13804 Query 474696 AACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAG 474755 || | || || |||||||||| || | ||||| |||| || |||||||| || | Sbjct 13805 AAGAGACAGCCGAAGCATATCTTGGCAAAAATGTAACAAATGCTGTTATTACTGTGCCTG 13864 Query 474756 CATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTA 474815 | || || || || ||||| | |||||||| || ||||| || ||||| ||||| | Sbjct 13865 CCTACTTCAACGACTCTCAGAGACAAGCAACAAAGGATGCTGGCGCTATTGCTGGTCTCA 13924 Query 474816 ATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875 ||||| | | || || || ||||| ||||| || ||| | || ||||| |||||||||| Sbjct 13925 ATGTTCTCAGGATAATAAACGAACCGACAGCGGCTGCAATAGCATATGGCCTTGATAAGA 13984 Query 474876 A---TTCTGACAAAGAAGTAAATGTTTTAATCTTTGA 474909 | ||| | | || ||| |||||| | |||||||| Sbjct 13985 AGACTTCAGGCGAA-AAG--AATGTTCTGATCTTTGA 14018 Score = 199 bits (220), Expect = 3e-45 Identities = 609/919 (66%), Gaps = 32/919 (3%) Strand=Plus/Plus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGT 475424 |||||||| || | |||||||| || ||||| ||||||||| || | || |||| | Sbjct 14086 ACAGCTGGCGACACGCATCTTGGCGGAGAAGACTTTGATAATCGAATGGTGAATCAC--T 14143 Query 475425 GTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTCAACATCTGCTAA---AGCAT 475481 ||| |||| |||||||| ||| | ||| ||| || | || || || ||| Sbjct 14144 TTGTACAAGAATTCAAGAGAAAATACAAAAAGGAT--TTGAGCA-CTAACAAGAGAGCTC 14200 Query 475482 TAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAA 475541 | |||||||| || || || ||||| | || ||| || | | || | || ||| Sbjct 14201 TGAGACGTCTGAGGACAGCCTGTGAGAGAGCAAAGAGAACATTGAGCTCATCAACGCAAG 14260 Query 475542 CTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGG 475601 | | | || ||||||| || ||||| || ||||||| | || || || |||| Sbjct 14261 CGAGCATCGAGATTGATTCGCTGTTTGAGGGCATTGATTTCTACACGTCCATCACCAGGG 14320 Query 475602 CTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAG 475661 | | ||| || || |||| | ||||| || |||| || | |||||||| || | | Sbjct 14321 CCAGATTCGAGGAACTTTGCGCCGATCTGTTCAGAAGCACTCTCGAACCCGTAGAGAAGG 14380 Query 475662 TTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTT 475721 |||||||| | || | ||||| | || || || || ||||| || || || | Sbjct 14381 CACTCAGAGACGCAAAGATGGACAAGGCTCAGGTGCACAGCATCGTTCTAGTCGGCGGCT 14440 Query 475722 CAACAAGAATTCCAAAAATAAGAGAAATGCTT--TCATCATAT-TTTAATGGTAAAAAGT 475778 | || || || ||||| || |||| |||| ||| || | ||||| || || | | Sbjct 14441 CTACCAGGATACCAAAGATTC-AGAA--GCTTCTTCAAGATTTCTTTAACGGCAAGGAAT 14497 Query 475779 TAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTA 475838 | || || | | ||||| ||||| |||||||| || || || ||||| || || || | Sbjct 14498 TGAACAAATCTATCAATCCGGATGAGGCTGTTGCTTACGGCGCAGCTGTTCAGGCGGCGA 14557 Query 475839 TTTT--ATCAGGTCAA-TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTC 475895 || | || | ||| || || |||| | || | | | | || | ||||| || | Sbjct 14558 TTCTGCATGGCGACAAGTCCGA--AGAAGTTCAAGA-TCTGCTTCTGCTGGACGTGACCC 14614 Query 475896 CACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATA 475955 |||| || || || |||| || | ||| || | ||||| | ||| ||| | || || | Sbjct 14615 CACTGTCGTTGGGAATTGAGACCGCTGGCGGTGTCATGACCACTCTGATTAAGAGGAACA 14674 Query 475956 CTCCTATCCCATGCAAAAAAT-CAAAAGTATTTTCCACTTATTCTGATAATCAAACAACT 476014 | | || || | |||| | | || ||| |||| ||||| || |||||| | Sbjct 14675 CCACGATACC-TACAAAGCAGACGCAAACATTCACCACATATTCCGACAATCAACCGGGA 14733 Query 476015 GTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG- 476073 ||| |||||| ||| || || |||||| | || |||||||| |||| ||||| Sbjct 14734 GTACTTATCCAAGTCTACGAGGGAGAAAGAGCGATGACCAAAGATAACAACATTCTTGGC 14793 Query 476074 AACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTAC 476133 || || ||| | || || || || || || ||||| || || ||||||||||| || Sbjct 14794 AAATTCGAAT-TAACGGGAATACCACCGGCGCCTAGAGGTGTGCCACAAATTGAAGTCAC 14852 Query 476134 TTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTA---GTAA 476190 || ||||||||||| || ||||| || || || |||| || ||||||| ||| Sbjct 14853 CTTCGATATTGATGCCAACGGTATACTAAACGTCTCTGCGATCGAGAAATCTACGGGTA- 14911 Query 476191 CAAGAGTAAAAATATAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCA 476250 |||| || || || || ||||| ||| | ||| |||| | ||||| | ||| | Sbjct 14912 -AAGA-AAACAAGATCACAATTACCAACGACAAGGGTCGATTGTCGAAAGAAGATATTGA 14969 Query 476251 ACGTATGGTTGATGAAGCC 476269 | ||||| | |||||| Sbjct 14970 GAGAATGGTGAACGAAGCC 14988 >seq3 Length=1948392 Score = 131 bits (144), Expect = 1e-24 Identities = 477/734 (65%), Gaps = 22/734 (3%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 || || || || || || ||||| | || || || |||| ||| | | | | || | Sbjct 422740 ACAGCGTGCGAGCGCGCGAAGCGTACACTGTCGTCGTCTACGCAAGCCAGTATCGAGATC 422681 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||| || | ||| ||||| || | |||| ||||| |||| || ||||| Sbjct 422680 GATTCGCTGTATGAGGGAATCGACTTCTATACATCCATTACCCGGGCGCGTTTCGAAGAG 422621 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 |||| | |||||||| | || | ||||||||||| || | | || || Sbjct 422620 CTTTGCGCCGATCTCTTCCGCGGTACCCTCGAACCCGTTGAGAAATCGTTGCGCGACGCT 422561 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||| | || ||| | || | ||||| || || | || || |||||||| | || || Sbjct 422560 AAAATGGATAAAGCGCAGATACATGACATCGTCTTGGTCGGCGGTTCAACCCGTATCCCC 422501 Query 475736 AAAATAAGAGAAATGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTA-- 475792 || || |||||| | || | |||| ||||||||| | || || |||| | Sbjct 422500 AAGATTC-AGAAATTGCTACAGGACTTTTTCAATGGTAAAGAATTGAAC--AAGTCCATC 422444 Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 ||||||||||| ||||| ||||| ||||| || || || |||||||| | || | | Sbjct 422443 AATCCTGATGAGGCTGTAGCATACGGAGCAGCCGTTCAGGCAGCTATCCT-GCACGGAGA 422385 Query 475853 TCAGAC-GAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCT 475911 | | | ||| || | | || | | || | || || ||||| || || | ||| | Sbjct 422384 TAAATCTGAGGAAGTGCAGGATCTGCTCCTGCTCGATGTTACTCCGCTGTCTCTTGGTAT 422325 Query 475912 TGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAA 475971 ||| || | || || | |||||| ||||| | || |||||| | || || | | | Sbjct 422324 TGAGACTGCAGGCGGTGTCATGACTGCGCTTATCAAAAGGAATACTACCATTCC-TACGA 422266 Query 475972 AAAATCAAAAGTA----TTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAA 476027 || |||| | | ||| | ||||| | || |||||| | |||| |||||| Sbjct 422265 AA---CAAACGCAGACCTTTACGACTTACGCCGACAATCAACCGGGTGTATTAATCCAAG 422209 Query 476028 TCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTG 476087 | | ||||||||| | | | || || || || ||| ||||| | || | || Sbjct 422208 TTTACGAAGGTGAACGCGCAATGACCAAGGACAACAACCTTCTTGGTAAGTTCGAACTCA 422149 Query 476088 AAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATG 476147 || ||||| || || || | |||||||| || || || || || || ||||| |||| Sbjct 422148 GCGGCATTCCACCCGCGCCTCGCGGAGTTCCCCAGATCGAGGTCACCTTCGATATCGATG 422089 Query 476148 CAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTA---GTAACAAGAGTAAAAATA 476204 | || |||||||| || || | || |||||||||| ||| ||||| || || | Sbjct 422088 CCAACGGTATTCTCAACGTATCCGCCGTGGATAAATCTACCGGTA--AAGAG-AATAAGA 422032 Query 476205 TAACTATTACAAAC 476218 | || || |||||| Sbjct 422031 TCACCATCACAAAC 422018 >seq150 Length=403005 Score = 120 bits (132), Expect = 2e-21 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| | || ||||| |||||| | || || |||||||| || ||||||||| Sbjct 341582 TTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGT 341523 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||| ||||| |||||||| || || ||| ||| ||| ||||| || Sbjct 341522 TGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTGTCT 341463 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | |||||||||||| ||||| || |||||||| || ||||| ||||| Sbjct 341462 GAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTG 341407 Score = 109 bits (120), Expect = 4e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| || | ||||| |||||||| |||||| | || ||||| | || ||| Sbjct 341396 CGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAAAGGGTT 341337 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 || |||||| |||||||| || |||||||| | ||| || |||||||||||||||||| Sbjct 341336 CTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCT 341277 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 || ||||| ||||| || || ||| ||| || ||||| | | | | || ||| Sbjct 341276 TCTTTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACTTCCAA- 341218 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || || ||||| || || || || || Sbjct 341217 AGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTG 341179 Score = 95.1 bits (104), Expect = 8e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||||| |||||||| |||||| | || || |||||||| || ||||||||| Sbjct 342000 TTGTAATCAGAAAGAGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGT 341941 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||||| |||||||| ||||| |||||||| ||||| Sbjct 341940 TGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTT 341906 >seq239 Length=229837 Score = 98.7 bits (108), Expect = 6e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||| || |||| ||||| | ||| || || ||||| || || || || ||||| || Sbjct 6134 ATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTG 6193 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| || || || || ||||||||||||||||| || ||| ||||||||| || Sbjct 6194 CTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTTTCAATAGTGTC 6253 Query 480713 AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||||||||||| || ||||| |||||||| || ||||| || || Sbjct 6254 GGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACGAATATCTG 6310 >seq160 Length=383029 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || || ||||||||||| || | | || || || ||||||||||||||||| Sbjct 143207 TCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTA 143148 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || ||||| || |||||| |||||| ||||| | | | | || ||| |||||| Sbjct 143147 TCCTGAATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGACTTCCAA-GGTAAT 143089 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||| ||||| || || || ||||| Sbjct 143088 GGTTTTGCCGGTTAGAGTTTTGACAAAGATTTG 143056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267897981350288