Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq150 134 2e-26 seq160 131 3e-25 >seq150 Length=403005 Score = 134 bits (148), Expect = 2e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || || ||||| | ||||| ||| |||| ||| || ||||||||||| || | | Sbjct 341357 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGC 341298 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||||||||| ||||||||||| || || ||||||| || | |||| || ||| Sbjct 341297 TGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTA 341238 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| || ||||| | ||| || ||||| || || || ||||||||||| || ||| Sbjct 341237 TCTGAAGCTTCGACTTCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGC 341178 Query 193359 AT 193360 || Sbjct 341177 AT 341176 >seq160 Length=383029 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||| || |||| || || ||||| ||||| || || || | Sbjct 143723 CGAAGAACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCG 143664 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| || ||||| || || ||||| ||||| ||||| |||||||||||| Sbjct 143663 TCTTCGAGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTA 143604 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||| || | ||| ||| || || || | ||| ||||| | || || Sbjct 143603 TCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAATGTGATT 143544 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || ||||| ||||| ||||| || ||||| Sbjct 143543 GTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143509 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 |||||||||| ||| | || | ||||| || || ||||| || | || | Sbjct 144407 CGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGACAGTGTGCGTCCG 144348 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || |||||||| || || |||||||| ||||| ||||| |||||||||||| Sbjct 144347 TCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTTA 144288 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || |||||||||| ||| | ||| || || || || | || || || ||||| || Sbjct 144287 TCCTGTATTTTGGCTTTGACATTCTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGATG 144228 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||||| || || || || ||||||||||| Sbjct 144227 GTTTTACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 |||||||||| ||| | || | ||||| || || || || || || || | Sbjct 143495 CGAAGTACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATCTGACAATGTGCGTCCG 143436 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||||| ||||| || || ||||| || || ||||| |||||||||||| Sbjct 143435 TCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTA 143376 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||| || | ||| ||| || || || | ||| ||||| || || || Sbjct 143375 TCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGATT 143316 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || ||||| ||||| || ||||| Sbjct 143315 GTTTTGCCGGTGAGAGTTTTGACAAAGATCTGCAT 143281 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| | | ||| || || | ||||| || | ||||| ||||| ||||| || Sbjct 144647 CCACCACGAAGTCGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGAC 144588 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | || || | || |||||||| || || ||||||||||| || ||||| Sbjct 144587 AGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGA 144528 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||||||||| |||||||||| || | || |||||| || || | ||| ||| Sbjct 144527 ATTCCTTCTTTATCCTGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGACT 144468 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | || || ||||| || || || ||||| ||||| || ||||| Sbjct 144467 TCCAATGTGATTGTTTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 144421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899580673321920