Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq160 125 1e-23 seq150 114 2e-20 seq63 96.9 5e-15 >seq160 Length=383029 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | || || ||||| ||||| || |||||||||| || Sbjct 143053 ATGCAAATCTTTGTCAAAACTCTAACCGGCAAAACCATTACCTTGGAAGTCGAAGCGTCC 143112 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| ||| ||||| || ||||| ||||| || |||||||| || Sbjct 143113 GATACCATTGAAAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGACCAG 143172 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || || ||||||||||| | || || ||||| || ||| Sbjct 143173 CAGAGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGACTACAAT 143232 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || || ||||| || Sbjct 143233 ATCCAGAAAGAATCAACTCTACATTTGGT 143261 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | || || ||||| || ||||| |||||||| | ||| Sbjct 144421 ATGCAGATCTTTGTCAAAACCCTCACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCT 144480 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || |||||||| ||||||||||| || ||||| || ||| Sbjct 144481 GACACTATTGAGAACGTCAAGGCCAAAATACAGGATAAAGAAGGAATTCCTCCGGACCAA 144540 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||||| ||||||||||| || | || | || || || ||| Sbjct 144541 CAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTCGGACTACAAT 144600 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| ||||| | || || |||||||| Sbjct 144601 ATACAGAAAGAATCCACTCTGCATTTAGT 144629 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | || || ||||| || ||| | |||||||| | ||| Sbjct 143281 ATGCAGATCTTTGTCAAAACTCTCACCGGCAAAACAATCACACTGGAAGTCGAGGCGTCT 143340 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || ||||| |||||||||||||| || |||||||| || Sbjct 143341 GACACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGACCAG 143400 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || || ||||||||||| | || || |||||||| || Sbjct 143401 CAGAGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTACAAC 143460 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| ||||| | || || ||||| || Sbjct 143461 ATACAGAAAGAATCAACTCTACATTTGGT 143489 Score = 118 bits (130), Expect = 2e-21 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | || || ||||| || ||||| |||||||| | ||| Sbjct 143509 ATGCAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCT 143568 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || ||||| |||||||||||||| || |||||||| || Sbjct 143569 GACACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGATCAG 143628 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| ||||| || |||||||| | || || ||||| || | Sbjct 143629 CAGAGGTTGATCTTTGCTGGTAAACAACTCGAAGACGGACGCACATTGTCAGACTACA-- 143686 Query 156003 ATATCCAAA 156011 ||||||||| Sbjct 143687 ATATCCAAA 143695 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| | ||||| || || ||||| || ||||| || | ||| Sbjct 142825 ATGCAGATTTTTGTAAAGACACTTACTGGCAAGACCATTACCTTGGAAGTAGAGGCGTCT 142884 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || |||||| |||||||| ||||| || || ||||| || Sbjct 142885 GATACGATTGAGAACGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCAGACCAG 142944 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||| || || ||||||||||| | || || |||||||| || Sbjct 142945 CAGAGATTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTACAAC 143004 Query 156003 AT 156004 || Sbjct 143005 AT 143006 Score = 113 bits (124), Expect = 7e-20 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | || || ||||| || ||||| |||||||| | || Sbjct 143737 ATGCAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCC 143796 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||||| || ||||| ||||| || |||||||| || Sbjct 143797 GACACAATTGAGAACGTTAAGGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAG 143856 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||| ||||| ||||||||||| | || || ||||| || | Sbjct 143857 CAAAGATTGATCTTTGCTGGTAAACAGCTCGAAGACGGACGCACATTGTCAGACTACA-- 143914 Query 156003 ATATCCAAA 156011 ||||||||| Sbjct 143915 ATATCCAAA 143923 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || || ||||| || ||| | |||||||| | || Sbjct 143965 ATGCAGATCTTNGTCAAAACTCTNACCGGNAAAACAATCACANTGGAAGTCGAGGCGTCC 144024 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||||| || ||||| ||||| || |||||||| || Sbjct 144025 GACACAATTGAGAACGTTAAGGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAG 144084 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||||||||||| | ||||| ||||||||||| || Sbjct 144085 CAAAGATTGATCTTCGCCGGAAAGCAGCTCGAGGA 144119 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | || ||| | || || ||||| || || | || ||||||| || Sbjct 144193 ATGCAAATATTCGTCAAGACACTCACAGGTAAAACCATCACTCTGGAGGTCGAAGCGTCG 144252 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| |||||||| ||||||||||| || ||||| || || Sbjct 144253 GACACCATCGAGAATGTCAAAGCCAAAATACAGGATAAAGAAGGAATTCCTCCGGATCAG 144312 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || |||||||| | ||||| ||||||||||| || Sbjct 144313 CAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGA 144347 >seq150 Length=403005 Score = 114 bits (126), Expect = 2e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | ||||| ||||| || || || |||||||||| ||| Sbjct 341176 ATGCAGATCTTTGTAAAAACTCTTACTGGGAAAACCATCACTTTGGAAGTCGAAGCTTCA 341235 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| || || ||||| || || |||||||| || ||||| || || Sbjct 341236 GATACCATAGAAAATGTTAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 341295 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| |||||||||||| || |||||| ||||| | || ||||| || Sbjct 341296 CAGCGTTTGATTTTTGCCGGTAAGCAACTAGAAGATGGAAGAACCCTTTCCGATTACAAC 341355 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || ||||| | || ||||| Sbjct 341356 ATCCAGAAAGAATCCACACTTCA 341378 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | ||||||||||| ||||| | |||||||| | || Sbjct 341403 AATGCAAATCTTCGTGAAAACTCTCACTGGAAAAACCATTACCCTTGAAGTCGAGGCCTC 341462 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||| || ||| |||||| ||||| ||||||||||| ||||| || || Sbjct 341463 AGACACTATAGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCA 341522 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | | || | ||| ||||| ||| | |||||| ||||| | || ||||| || Sbjct 341523 ACAACGTCTAATCTTTGCTGGTAAACAGTTGGAAGATGGAAGAACCCTTTCCGATTACAA 341582 Query 156002 TAT 156004 || Sbjct 341583 CAT 341585 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155894 AAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGAT 155953 ||| || ||| ||| || ||||| ||||||||||| ||||| || |||||| | | || Sbjct 341893 AAATGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAACAACGTCTAAT 341952 Query 155954 TTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGA 156013 | ||| ||||| ||| | |||||| |||||| | || ||||| || || ||||| Sbjct 341953 CTTTGCTGGTAAACAGTTGGAAGATGGAAGAACTCTTTCTGATTACAACATCCAGAAAGA 342012 Query 156014 GGCGACGCTTCATTTAGTGTTAAGA 156038 | || || |||||||| || ||| Sbjct 342013 ATCCACACTACATTTAGTTTTGAGA 342037 >seq63 Length=804878 Score = 96.9 bits (106), Expect = 5e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 18410 TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469 |||||| | | |||| | ||||| || || || | |||||||||||||||||||| | Sbjct 4587 TTTTCTCTCGGATCTGTAATATATGTTTCAATGAGTAAAGAATACATTTCAGAATGGACA 4528 Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTA-GCCTCGGGATATTGAATCTCGCT 18528 | || |||| |||||| ||||||| || || ||||| || ||| | ||| Sbjct 4527 GTCTCTATAGTGGCCTGAAAGATATAAAA-GAAATAGGCCTCAGGCAATTTTACCTCCTG 4469 Query 18529 ATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAA 18588 | ||||| || | ||||| |||||||| || ||||||| || || || ||||| || Sbjct 4468 GCAGAATCTCTCAATTAAATTTTCATTAACAATCCCGTCAGAAGCAGCAAAGAATGCTAA 4409 Query 18589 AACATATTTAATGAAATGTTTTTCATT 18615 |||| || |||||| ||||||| Sbjct 4408 TACATGGGAGATAAAATGTCTTTCATT 4382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731812023089600