Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq150 132 9e-26 seq160 131 3e-25 >seq150 Length=403005 Score = 132 bits (146), Expect = 9e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||| || | | || | | || ||||| |||||||||||||| |||| | Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || || || || |||||||| ||||| |||||| ||||||||| |||||| Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTG 341466 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| | || ||||| || ||||||||||| ||||| | ||||| | ||| || ||| Sbjct 341465 TCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGC 341406 Query 172068 ATT 172070 ||| Sbjct 341405 ATT 341403 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| ||| || || || | || | || | ||||| || || ||||| Sbjct 341405 ATTCCTCCTCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCG 341346 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | | || || | ||| ||||| |||||||| || | ||| || ||||| Sbjct 341345 GAAAGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGA 341286 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| || || ||||| || ||||| ||| |||||||| | ||| Sbjct 341285 GGAATTCCTTCTTTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCG 341226 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| |||||||| ||||| | ||||| | || |||||||| Sbjct 341225 ACTTCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCAT 341176 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| || | ||||| || |||||||||| || | ||||| || || ||||| || Sbjct 342049 ACCTCCCCGAAGTCTCAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGA 341990 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || | | || ||||| |||||||||||||| |||| | ||||| || || || Sbjct 341989 AAGAGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGG 341930 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 171997 || |||||||| ||||| || ||| ||||||||| Sbjct 341929 AATGCCTTCTTTGTCTTGGATCTTAGCTTTTACATT 341894 >seq160 Length=383029 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | ||| ||||||| ||| | ||||| ||||| || ||| Sbjct 143282 ATGCCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCT 143223 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| |||| || | ||||| |||||||| || || ||||| ||||| || Sbjct 143222 GACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGA 143163 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| ||||| || ||||| ||| || || || ||||| |||| ||| Sbjct 143162 GGAATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCG 143103 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||||||||| || |||| ||||| | || || ||||| Sbjct 143102 ACTTCCAAGGTAATGGTTTTGCCGGTTAGAGTTTTGACAAAGATTTGCAT 143053 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || ||||||||||||| || || ||||| || ||| Sbjct 143738 ATGCCACCACGTAGACGAAGAACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCT 143679 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| |||| || | ||||||||||||||| || || ||||| || || || Sbjct 143678 GACAATGTGCGTCCGTCTTCGAGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGA 143619 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| ||||| || || || || || || |||| || Sbjct 143618 GGAATTCCTTCTTTATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCG 143559 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || || ||||| || |||| ||||| | || |||||||| Sbjct 143558 ACTTCCAATGTGATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143509 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | ||| ||||||| ||| | ||||| || || |||||| Sbjct 143510 ATGCCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATCT 143451 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| |||| || | ||||| |||||||| || || ||||| ||||| || Sbjct 143450 GACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGA 143391 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| ||||| || || || || || || |||| || Sbjct 143390 GGAATTCCTTCTTTATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCG 143331 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || ||||| || || | ||||| | || |||||||| Sbjct 143330 ACTTCCAGTGTGATTGTTTTGCCGGTGAGAGTTTTGACAAAGATCTGCAT 143281 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | ||| ||||||| ||| | ||||| || || || || Sbjct 144422 ATGCCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCC 144363 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| |||| || | || || || || || || |||||||| || || || Sbjct 144362 GACAGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGA 144303 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||||||||| |||||||| ||| ||||| || || || |||| ||| Sbjct 144302 GGAATTCCTTCTTTATCCTGTATTTTGGCTTTGACATTCTCGATGGTGTCCGACGCTTCG 144243 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||||||||| || | ||| || | |||||| ||||| Sbjct 144242 ACCTCCAGAGTGATGGTTTTACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 Score = 113 bits (124), Expect = 8e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | |||||| | |||||||| | ||| | ||||| ||||| || || || Sbjct 144647 CCACCACGAAGTCGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGAC 144588 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | ||| |||| || | || || || || || || |||||||||||||| || || Sbjct 144587 AGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGA 144528 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 |||||||||||||| |||||||| || || || ||||| || |||| || ||| Sbjct 144527 ATTCCTTCTTTATCCTGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGACT 144468 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | || || ||||| || || | ||||| | || |||||||| Sbjct 144467 TCCAATGTGATTGTTTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 144421 Score = 100 bits (110), Expect = 5e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| | ||| | || || ||||| || ||||| || | ||| |||| || Sbjct 143945 ACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCG 143886 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | |||||||||||||| || ||||| || || || || || |||||||| ||||| || Sbjct 143885 AGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGA 143826 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| || || || || || || |||| || ||||| | || || ||||| Sbjct 143825 ATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCAATGTGATTGTTTTG 143766 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||||| | || |||||||| Sbjct 143765 CCGGTTAGAGTTTTGACAAAGATCTGCAT 143737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905061824104800