Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1511 104 7e-17 seq111 93.3 1e-13 seq60 86.0 2e-11 >seq1511 Length=28125 Score = 104 bits (114), Expect = 7e-17 Identities = 179/260 (69%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| || || | |||||| || || ||||||||| | |||||| ||||| ||| Sbjct 4445 TCCATAGCTTTTATCAGACGACGTTGGATGTAACCAGTTTCGGCTGTTTTCACAGCAGTA 4386 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| ||||||| |||||||||||||| | | ||| |||| || || Sbjct 4385 TCGATGAGACCTTCACGACCGCCCATAGCATGGAAATAAAATTCTGACGGTGTGAGACCG 4326 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754 | | | | || ||||||| ||||| || | |||||| || || || | ||| Sbjct 4325 GCTAGATATGAATTCTCAACAAAACCGCGAGACTCGGGACCATAATCATCTTTTATGAAG 4266 Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814 || |||| || || || | ||| | || || || || || |||||||||||||| Sbjct 4265 TGCGGCAACGTTCTCTTACGGAAACCGAACGGTATCCGTTTACCTTCAACGTTCTGCTGC 4206 Query 302815 CCCAGGCACGAAATCATCTG 302834 || | || | ||| | ||| Sbjct 4205 CCTACACAAGCAATAACCTG 4186 >seq111 Length=537740 Score = 93.3 bits (102), Expect = 1e-13 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 |||||||||||| ||||| |||||||||||||| || || || ||| | || || || Sbjct 350031 ATAGTCATACGAGAAGGAATGGCATGGGGATTGATAATAATATCAGGTGTAAGACCTTCG 349972 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963 |||||| |||||||| | || | | || || |||| || || ||||| ||||| Sbjct 349971 CAAGTGAACGGCATATCTTCTTGC-CTGTACTGAATTCCGCATGTACCTTTTTGACCGTG 349913 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 |||||| || ||||| ||||| ||| ||| ||||| || | ||| | || || Sbjct 349912 ACGAGACGCAAATTTATCGCCAATTTGTGGAATGCGTACACTGCGCACGCGGATTTTGCA 349853 Query 252024 GAAGTTGTAACCATC 252038 || ||||| || || Sbjct 349852 AAATTTGTATCCTTC 349838 >seq60 Length=814933 Score = 86.0 bits (94), Expect = 2e-11 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 60142 TGTGAAAATATACCTCTCGGAT--GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAAT 60199 ||||||||| || ||||||| || || || || || || ||| | || || ||| Sbjct 553467 TGTGAAAATGTA--TCTCGGACTAGCAGCATCTTTTCCTCCAGCAAGTCTTGTACCGAAT 553524 Query 60200 TGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCA 60259 || ||| |||| |||| ||||| |||||||| ||||||||| ||||| |||||| Sbjct 553525 TGACCGATTGGTTGGAGCAGATTGATGTTGTTGCTGCCTACGAAGTTTTGCGCGAGATTG 553584 Query 60260 ACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATAT 60319 | || | | | ||| | ||| ||||||||||| | |||||||| | || || Sbjct 553585 ATTATGGTTGCCATCAAAGATGTTTCGCCGTGATGATAAGCGGAATGTTCGGCGACCGAT 553644 Query 60320 CCACTGAATTGTGCGACTTT 60339 || ||||| |||||||| Sbjct 553645 CCCGCTAATTGCGCGACTTT 553664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471693969161372