Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq288 219 3e-52 seq222 95.1 1e-14 seq150 95.1 1e-14 seq160 84.2 2e-11 >seq288 Length=172500 Score = 219 bits (242), Expect = 3e-52 Identities = 321/454 (71%), Gaps = 0/454 (0%) Strand=Plus/Minus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 |||||||||||||| ||| | ||||| | |||||| | || || |||| Sbjct 160854 CGGCGGGTTTTTCAAGATGTAAGTGTTTAACTTATGGTTACTCTCCAGAAGACCATGATG 160795 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGT 34322 ||| || ||||||||||| || | || | ||| |||| | || || ||||| || Sbjct 160794 ACCACAGGCTTTGCAGCCTTGCGATATCGTCCCCTTCTTAGAGCTAACCATCAGCTCGGT 160735 Query 34323 CTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTC 34382 |||||| |||||||| | ||||| | ||| | || ||||| |||||||| | || || Sbjct 160734 CTCCGGATTGTCACAAGCTGGACAAAGGACATATTTTCGGATAAAACCATCCAACAAATC 160675 Query 34383 CTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGAC 34442 || | || | ||||| || || |||||||| || |||||||| || |||| | Sbjct 160674 TTGCAGTTTCGTTGCATCGTGCGAACCATTGACGATAAAGCGTTCGTTCTTAAAATCAAA 160615 Query 34443 CTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCC 34502 || ||||| |||||||| ||||| ||||| || || ||||| || | || ||||| || Sbjct 160614 TTGAGTTTGTGCGCCCAGTTCGCAGCCGAAATATTTAGTCGGATATGTAGCTGGACGACC 160555 Query 34503 AAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCC 34562 | || || || | || ||||||||| || || || ||||||||||| || || || Sbjct 160554 TATGGCTTTTGCTACATCTACCATGTTGACAATCACTGTTTTGATGCCGTTTCCTTTACC 160495 Query 34563 TTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCG 34622 ||| || || || || || ||||| ||||| || ||||| || || |||||||| Sbjct 160494 TTCCACTTTTGCCTGAATCCGTGGCATCTTGTAACGATAGAAGGCATCGCTGACATTGCG 160435 Query 34623 GTTAACGTTCACAGTCCCCATCGTGGCTGGTGTT 34656 || || ||||| ||||||| ||| ||| |||| Sbjct 160434 ATTGACATTCACGCTCCCCATAGTGACTGCTGTT 160401 >seq222 Length=252824 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/238 (69%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 27702 GCTTCGTATGGATAATCATTTTCGGCTTGTATGCCGCCCATATTCATGACGGCTTCGAAC 27761 || |||||||||||||| ||| || | ||||||| ||| | |||| | || Sbjct 237474 GCATCGTATGGATAATCCGATTCTAATTCGAGACCGCCCAACTTCTCAATGGCTCTGTAC 237415 Query 27762 GCCGTGTGCAGCAAACCTCCGTTGCAGCCCGCGTTTACAAAATCGCAGTCGATGAGCTGT 27821 || ||| | ||| ||| |||||||| ||| | | | ||||||||||| |||| | Sbjct 237414 GCGTTGTCCGGCAGACCGCCGTTGCAACCCTCATCCAAGTCATCGCAGTCGACCAGCTCT 237355 Query 27822 TGCTCTGACAGATTTATCAATTGATTGTGTTTGATTGCAAACTGGCTTTCTAAACTGCCA 27881 ||||| ||||| | || || || ||||| ||| |||||| || | | ||||| Sbjct 237354 TGCTCGGACAGCGACAACAGCTGGCCATGCTTGATCGCATACTGGCCCTCGACATTGCCA 237295 Query 27882 AGGGTGGCG--AAGGCCCAACACGCGCCGCACATGCCTTGATTTTTCACATTAGTCAC 27937 | | || || |||||||||| |||||||||||| |||| ||| || |||||| Sbjct 237294 --GTTACCGAAAACGCCCAACACGAGCCGCACATGCCCTGATCTTTTACCGAAGTCAC 237239 >seq150 Length=403005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTG 110330 ||||||||| || || |||||| | || || |||||||||||| | ||| ||| ||| Sbjct 341403 AATGCAAATCTTCGTGAAAACTCTCACTGGAAAAACCATTACCCTTGAAGTCGAGGCCTC 341462 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || ||| | | | |||||| || || |||||||||||| | || |||| Sbjct 341463 A-GACACTATAGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATC 341521 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 ||||| | || || | ||| ||||||||| |||| |||| ||||| | | ||||||| Sbjct 341522 AACAACGTCTAATCTTTGCTGGTAAACAGTTGGAAGATGGAAGAACCCTTTCCGATTACA 341581 Query 110451 ACAT 110454 |||| Sbjct 341582 ACAT 341585 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 110348 GTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTAT 110407 |||||| ||||| |||||||||||| | || ||||||||| | || || | | Sbjct 341897 GTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAACAACGTCTAATCTTT 341956 Query 110408 GCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCT 110467 || ||||||||| |||| |||| ||||| | | ||||||||||| || |||||||| Sbjct 341957 GCTGGTAAACAGTTGGAAGATGGAAGAACTCTTTCTGATTACAACATCCAGAAAGAATCC 342016 Query 110468 ACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || | || | || || ||||| || || || Sbjct 342017 ACACTACATTTAGTTTTGAGACTTCGGGGAGG 342048 Score = 82.4 bits (90), Expect = 6e-11 Identities = 163/239 (68%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 110264 AGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-C 110322 ||||| | ||||| || ||||| |||||| | || || |||||||| || | ||| | Sbjct 341167 AGATTCATCATGCAGATCTTTGTAAAAACTCTTACTGGGAAAACCATCACTTTGGAAGTC 341226 Query 110323 GGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCC 110382 | ||| | | ||||| | | | || || || ||| ||||||||||| | || Sbjct 341227 GAAGCTTCA-GATACCATAGAAAATGTTAAGGCCAAAATTCAGGACAAAGAAGGAATTCC 341285 Query 110383 CGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGC 110442 ||||| || | | |||| ||| ||||| || || || |||| ||||| | | Sbjct 341286 TCCTGATCAGCAGCGTTTGATTTTTGCCGGTAAGCAACTAGAAGATGGAAGAACCCTTTC 341345 Query 110443 GGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||| || |||||||| || | ||| | || || | || ||||| |||| Sbjct 341346 CGATTACAACATCCAGAAAGAATCCACACTTCACCTTGTTTTGCGCCTTCGAGGAGGAA 341404 >seq160 Length=383029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAA-ACGGAGCCTGA 110331 |||||||| |||||||||||| |||||||||||||||||||| | ||| || ||| | Sbjct 143053 ATGCAAATCTTTGTCAAAACTCTAACCGGCAAAACCATTACCTTGGAAGTCGAAGCGT-C 143111 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || ||| || ||| || || ||||| | || || || Sbjct 143112 CGATACCATTGAAAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGACCA 143171 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | || | ||| || |||||||| || || | | ||| || | || ||||| Sbjct 143172 GCAGAGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGACTACAA 143231 Query 110452 CATTCAAAAAGAATCTAC 110469 || || |||||||| || Sbjct 143232 TATCCAGAAAGAATCAAC 143249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412808613440108