Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq160 104 2e-17 seq239 102 5e-17 seq150 89.7 3e-13 >seq160 Length=383029 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| || || || | |||| | || || || || ||||| || ||| Sbjct 143015 TCCTTCTGGATGTTGTAATCTGACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAG 142956 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||||||| | || | || ||||| || | ||||| |||||| Sbjct 142955 ATCAATCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACGTTC 142896 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| ||| ||||| || || | ||| |||||||| || || || ||||||||| Sbjct 142895 TCAATCGTATCAGACGCCTCTACTTCCAAGGTAATGGTCTTGCCAGTAAGTGTCTTTACA 142836 Query 34967 AAGATCTGCATG 34978 || ||||||||| Sbjct 142835 AAAATCTGCATG 142824 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| || || |||||||| || |||| | || || || ||||||||||||||| Sbjct 144611 TCTTTCTGTATATTGTAGTCCGACAGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAG 144552 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || || ||||| | || | || || || || | |||||| |||||| Sbjct 144551 ATCAATCTCTGTTGGTCCGGAGGAATTCCTTCTTTATCCTGTATTTTGGCCTTGACGTTC 144492 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| |||||||| || | || || || || || |||||||| || ||| Sbjct 144491 TCAATAGTGTCAGACGCCTCGACTTCCAATGTGATTGTTTTGCCGGTGAGGGTTTTGACA 144432 Query 34967 AAGATCTGCATG 34978 |||||||||||| Sbjct 144431 AAGATCTGCATG 144420 Score = 96.9 bits (106), Expect = 2e-15 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| |||||||| | |||| | || || || ||||||||||||||| Sbjct 144155 TCCTTCTGGATGTTGTAGTCCGACAATGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAG 144096 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || |||||| ||| | || | || ||||| || | ||||| || ||| Sbjct 144095 ATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGAATTTTGGCCTTAACGTTC 144036 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || |||||||| || | || || || || || || || || || || Sbjct 144035 TCAATTGTGTCGGACGCCTCGACTTCCANTGTGATTGTTTTNCCGGTNAGAGTTTTGACN 143976 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 143975 AAGATCTGCAT 143965 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||| |||||||| || |||| | || || || ||||||||||||||| Sbjct 144383 TCTTTCTGGATGTTGTAGTCCGACAGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAG 144324 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| || | || | || || || || | |||||| |||||| || Sbjct 144323 ATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTTATCCTGTATTTTGGCTTTGAC--AT 144266 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | || || ||||| || | || ||||| || || ||||| ||||| | Sbjct 144265 TCTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGATGGTTTTACCTGTGAGTGTCTTGA 144206 Query 34965 CAAAGATCTGCAT 34977 | || || ||||| Sbjct 144205 CGAATATTTGCAT 144193 >seq239 Length=229837 Score = 102 bits (112), Expect = 5e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||| || || ||||| || || | || |||| ||||| ||||| ||||||||||| Sbjct 6126 TTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATG 6185 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 || || ||||| || | || | |||||||||||| | || || || || | | Sbjct 6186 AGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTTTCA 6245 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | || ||| || || |||| ||| |||||||| |||||||| || || || || Sbjct 6246 ATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACGAAT 6305 Query 34970 ATCTGCATG 34978 ||||||||| Sbjct 6306 ATCTGCATG 6314 >seq150 Length=403005 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || ||||||| ||| || ||||| ||||| || || || ||| | | |||| || Sbjct 341384 ACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAAAGGGTTCTTCCATCTTCT 341325 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||| ||||| || |||| || ||||| || | || | || || ||||| | Sbjct 341324 AGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGA 341265 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 ||||| || || | |||| | || || ||||| || | || ||||| || Sbjct 341264 ATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACTTCCAAAGTGATGGTTTTC 341205 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || || || |||||||||||||||||||| Sbjct 341204 CCAGTAAGAGTTTTTACAAAGATCTGCATGAT 341173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325666776738164