Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq222 93.3 3e-14 seq160 89.7 4e-13 seq12 82.4 6e-11 >seq222 Length=252824 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 27968 GCTTCGTACGGATAATCACCTTCGGCTTGTATGCCGCCCATGTTCATGATGGCCTCGTAC 28027 || ||||| |||||||| ||| || | ||||||| ||| ||||| |||| Sbjct 237474 GCATCGTATGGATAATCCGATTCTAATTCGAGACCGCCCAACTTCTCAATGGCTCTGTAC 237415 Query 28028 GCCGTGTGCAGCAAACCTCCGTCACAGCCCGCGTCCACAAAGTCGCAGTCAATAAGCTGT 28087 || ||| | ||| ||| |||| || ||| | |||| |||||||| | |||| | Sbjct 237414 GCGTTGTCCGGCAGACCGCCGTTGCAACCCTCATCCAAGTCATCGCAGTCGACCAGCTCT 237355 Query 28088 TGCTCTGACAGGTTTATAAGTTGATTGTGTTTGATTGCAAACTGGCTTTCTAAACTGCCA 28147 ||||| ||||| | || || || ||||| ||| |||||| || | | ||||| Sbjct 237354 TGCTCGGACAGCGACAACAGCTGGCCATGCTTGATCGCATACTGGCCCTCGACATTGCCA 237295 Query 28148 AGGGTGGCAAAGGCCCAACACGCGCCGCACATGCCTTGATTTTTTACACTAGTCAC 28203 | ||| |||||||||| |||||||||||| |||| |||||| |||||| Sbjct 237294 GTTACCGAAAACGCCCAACACGAGCCGCACATGCCCTGATCTTTTACCGAAGTCAC 237239 >seq160 Length=383029 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||||||| |||| ||||||||||||||| | ||| || || | Sbjct 143053 ATGCAAATCTTTGTCAAAACTCTAACCGGCAAAACCATTACCTTGGAAGTCGAAGCGTCC 143112 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| || ||| ||||| ||||| | || || ||| Sbjct 143113 GATACCATTGAAAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGACCAG 143172 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || |||||||| || |||| ||| || | |||||||| Sbjct 143173 CAGAGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGACTACAAT 143232 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || || || || || Sbjct 143233 ATCCAGAAAGAATCAAC 143249 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||||||| |||| |||||||| || || | ||| ||||| | Sbjct 143737 ATGCAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCC 143796 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || || ||| ||||| ||||| | || |||||| Sbjct 143797 GACACAATTGAGAACGTTAAGGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAG 143856 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | || | ||| ||||||||||| || |||| ||| || | |||||||| Sbjct 143857 CAAAGATTGATCTTTGCTGGTAAACAGCTCGAAGACGGACGCACATTGTCAGACTACAAT 143916 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || |||||||| || || | || |||| Sbjct 143917 ATCCAAAAGGAATCNACTNTNCATTTGGT 143945 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||||||| | || || ||||| || || | ||| ||||| | Sbjct 143965 ATGCAGATCTTNGTCAAAACTCTNACCGGNAAAACAATCACANTGGAAGTCGAGGCGTCC 144024 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || || ||| ||||| ||||| | || |||||| Sbjct 144025 GACACAATTGAGAACGTTAAGGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAG 144084 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | || | || || || ||||| ||||||| ||| || ||||||||||| Sbjct 144085 CAAAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACATTGTCGGACTACAAC 144144 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 || || ||||| ||||| ||||| | || ||||| Sbjct 144145 ATCCAGAAGGAATCTACTTTGCATTTAGTCTTGAG 144179 >seq12 Length=1501184 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 |||||||| ||| | || | || || || ||| ||||||||| || || || ||||| Sbjct 683521 GATCAGCAAAGATTGATCTTCGCTGGAAAGCAGTTGGAGGACGGCAGGACTCTGTCGGAC 683462 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || || ||||||||||| ||||| |||| || | |||||||| || Sbjct 683461 TACAATATACAGAAGGAGTCTACTTTGCATTTGGTTCTGCGCTTGCGAGGCGG 683409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398844929245084