Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq160 136 3e-27 seq150 136 3e-27 seq239 82.4 6e-11 >seq160 Length=383029 Score = 136 bits (150), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||| || |||||||| | || ||||| ||||| || || || || | ||||| |||| Sbjct 143724 ACGAAGAACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCTGACAATG-TGCGTC 143666 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || ||||||||||| |||||| | ||||| || |||||||| || ||||| || |||| Sbjct 143665 CGTCTTCGAGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTT 143606 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 | ||||| | ||| ||||| |||| | |||||||| || ||||| | || | Sbjct 143605 TATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAATGTGA 143546 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| |||| ||||| ||||| |||||||| Sbjct 143545 TTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143509 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| || || |||||||| || ||||| || |||| | ||||| Sbjct 144408 ACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGACAGTGTGCGTCC 144349 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || || || || | |||||||| ||||||||||| ||||| || ||||| Sbjct 144348 GTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTT 144289 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || |||| ||| ||||||| | || | ||||| || ||| || || ||||| || Sbjct 144288 ATCCTGTATTTTGGCTTTGACATTCTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGAT 144229 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || | || || || ||||| ||||| Sbjct 144228 GGTTTTACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || ||||| || ||||||||||| || || || || |||| | ||||| Sbjct 144635 CGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGACAGTGTGCGTCCG 144576 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || || || | |||||||| || || ||||| ||||| || ||||| Sbjct 144575 TCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGAATTCCTTCTTTA 144516 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || |||| ||| ||||| | || | ||||||||| || ||||| | || || Sbjct 144515 TCCTGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGACTTCCAATGTGATT 144456 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || | |||||| ||||| |||||||| Sbjct 144455 GTTTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 144421 Score = 125 bits (138), Expect = 6e-24 Identities = 161/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||| || |||||||| | || ||||| ||||| || || || || | ||||| |||| Sbjct 143952 ACGAAGAACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTCTGACAATG-TGCGTC 143894 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || ||||| ||||| |||||| | ||||||||||||||||| || ||||| || || | Sbjct 143893 CGTCTTCGAGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCT 143834 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 | || || |||||| | || || | || | ||||| || || ||||| | || Sbjct 143833 TATCCTG-AATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCAATGTG 143775 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| |||| ||||| ||||| |||||||| Sbjct 143774 ATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143737 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATCATC 29636 || ||||| | || ||||| || || ||||| || |||| ||||| |||| || || Sbjct 144173 ACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCCGACAATG-TGCGTCCGTCCTC 144115 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 ||| || || || || | ||||||||||||||||| || ||||| || || || || || Sbjct 144114 GAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTG 144055 Query 29697 TAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 |||||| | || || | || | ||||| || || ||||| | || || |||| Sbjct 144054 -AATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCANTGTGATTGTTT 143996 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || | ||||| || || |||||||| Sbjct 143995 TNCCGGTNAGAGTTTTGACNAAGATCTGCAT 143965 >seq150 Length=403005 Score = 136 bits (150), Expect = 3e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| ||||||||||| || ||||| ||||| | || ||| | ||| || ||||| Sbjct 341378 TGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAAAGGGTTCTTCCATCTTCTAGTTGC 341319 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | ||||| | |||||||| || ||||| || |||||||| || |||||| Sbjct 341318 TTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTG-AATTTT 341260 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | || ||| |||||| || || ||| ||| ||||| | ||| || ||||| ||||| Sbjct 341259 GGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACTTCCAAAGTGATGGTTTTCCCAGT 341200 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | ||||| ||||| |||||||| Sbjct 341199 AAGAGTTTTTACAAAGATCTGCAT 341176 Score = 105 bits (116), Expect = 5e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 29605 ATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTT 29664 ||||| ||||| | || ||| | ||| || | ||||| |||||| | || | | | Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526 Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTG 29724 || ||||| || ||||| || ||||||||||| | ||| ||| ||| |||||| |||| Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTG 341466 Query 29725 TCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 || || || |||||||| || || ||||| ||||| | ||||| || || || ||| Sbjct 341465 TCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGC 341406 Query 29785 ATT 29787 ||| Sbjct 341405 ATT 341403 >seq239 Length=229837 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | || | | ||||||||||| || || ||||| || Sbjct 6158 ATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGTGGGATCCCCTCCTT 6217 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | || ||| |||| | |||||| || ||| || ||||| || | Sbjct 6218 GTCTTG-AATCTTGGCCTTCACATTTTCAATAGTGTCGGAGGCTTCCACCTCAAGGGTAA 6276 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || | ||||| || ||||||||||| Sbjct 6277 TGGTCTTACCCGTGAGAGTTTTCACGAATATCTGCAT 6313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385188420504396