Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq371 385 4e-101 seq3 215 4e-50 seq36 107 1e-17 >seq371 Length=115487 Score = 385 bits (426), Expect = 4e-101 Identities = 912/1366 (67%), Gaps = 10/1366 (1%) Strand=Plus/Minus Query 281330 GCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATA 281389 ||||| | | |||||||||||| | |||| || |||| || | || ||||| Sbjct 14987 GCTTCGTTCACCATTCTCTCAATATCTTCTTTCGACAATCGACCCTTGTCGTTGGTAATT 14928 Query 281390 GTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTG 281449 || || || || ||| || ||||| || |||| || || || ||||| ||| Sbjct 14927 GTGATCTTGTTTTCTTTACCCGTAGATTTCTCGATCGCAGAGACGTTTAGTATACCGTTG 14868 Query 281450 GCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCT 281509 ||||| | ||| || |||||||||||||| || || ||||| | || ||||| || || Sbjct 14867 GCATCAATATCGAAGGTGACTTCAATTTGTGGCACACCTCTAGGCGCCGGTGGTATTCCC 14808 Query 281510 TCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAA 281569 || | ||| | || ||| | || |||||||| || | || ||| |||||| | Sbjct 14807 GTTAATTCGAATTTGCCAAGAATGTTGTTATCTTTGGTCATCGCTCTTTCTCCCTCGTAG 14748 Query 281570 ATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTA 281629 | ||||||| ||| | | |||||| || ||||| || || ||| | | | || Sbjct 14747 ACTTGGATAAGTACTCCCGGTTGATTGTCGGAATATGTGGTGAATGTTTGCGTCTGCTTT 14688 Query 281630 CAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAA 281689 ||| || || ||||| || | ||| | | ||||||| | ||| ||||| || || | Sbjct 14687 GTAGGTATCGTGGTGTTCCTCTTAATCAGAGTGGTCATGACACCGCCAGCGGTCTCAATT 14628 Query 281690 CCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGA 281749 || | || || || || || || | || | | || ||||| || ||| | | Sbjct 14627 CCCAACGACAGTGGGGTCACGTCCAGCAGAAGCAGATCTTGAACTTCTTCGGACTTGTCG 14568 Query 281750 CCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACA 281809 ||| ||||| || || |||| ||| || || || |||||||| ||||| ||||| | | Sbjct 14567 CCATGCAGAATCGCCGCCTGAACAGCTGCGCCGTAAGCAACAGCCTCATCCGGATTGATA 14508 Query 281810 GTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAAT 281868 | || || | || || || || || |||| | |||||| | ||| | ||| || || Sbjct 14507 GATTTGTTCAATTCCTTGCCGTTAAAGAAATCTTGAAGAAGCT-TCTGAATCTTTGGTAT 14449 Query 281869 ACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATC 281928 | | || || || |||| || || |||||||| | || |||| |||| || Sbjct 14448 CCTGGTAGAGCCGCCGACTAGAACGATGCTGTGCACCTGAGCCTTGTCCATCTTTGCGTC 14389 Query 281929 CAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTC 281988 | | || || |||||||| ||| ||| |||| || | |||||||| || Sbjct 14388 TCTGAGTGCCTTCTCTACGGGTTCGAGAGTGCTTCTGAACAGATCGGCGCAAAGTTCCTC 14329 Query 281989 GAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACT 282046 |||| | || || || || ||| | || || ||||| || || |||| ||||||| Sbjct 14328 GAATCTGGCCCTGGT--GATGGACGTGTAGAAATCAATGCCCTCAAACAGCGAATCAATC 14271 Query 282047 TCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTT 282106 || || | | ||| || || || | || | || || | ||||| |||||||| Sbjct 14270 TCGATGCTCGCTTGCGTTGATGAGCTCAATGTTCTCTTTGCTCTCTCACAGGCTGTCCTC 14211 Query 282107 AGTCTTCGTAAGGCTTT-TGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATC 282165 || | || | ||| | | | | || | |||||| |||| |||||||||||||| || Sbjct 14210 AGACGTCTCAGAGCTCTCTTGTTAGTGCT-CAAATCCTTTTTGTATTTTCTCTTGAATTC 14152 Query 282166 TTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCC 282225 || ||| | | || | ||||||||||| ||||| || || | | || | || Sbjct 14151 TTGTACAAAGTGATTCACCATTCGATTATCAAAGTCTTCTCCGCCAAGATGCGTGTCGCC 14092 Query 282226 TGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGT 282285 | || | | | |||| || | ||||| || | | ||| | | |||||| ||| Sbjct 14091 AGCTGTGGATTTCACTTCAAAGATGCCATCCTCGATTGTCAAGATTGATACATCAAAGGT 14032 Query 282286 TCCACCACCCATATCAAAAATAAGTACATTCATTTCTT-TGTCTTGGTTTTTATCAAGAC 282344 || || |||| ||||| || || |||||| |||| || | || |||||||| | Sbjct 14031 GCCTCCGCCCAAGTCAAAGATCAGAACATTCTTTTCGCCTGAAGTC-TTCTTATCAAGGC 13973 Query 282345 CATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAA 282404 |||| || | ||||| || || ||||| || || || || | |||||| |||||||||| Sbjct 13972 CATATGCTATTGCAGCCGCTGTCGGTTCGTTTATTATCCTGAGAACATTGAGACCAGCAA 13913 Query 282405 TTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAA 282464 | || ||||| || || |||||||| || || ||||| || || ||||| ||||||| Sbjct 13912 TAGCGCCAGCATCCTTTGTTGCTTGTCTCTGAGAGTCGTTGAAGTAGGCAGGCACAGTAA 13853 Query 282465 TAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTA 282524 |||| |||| |||||| | ||| |||| ||| || ||||| | ||||||||| ||| Sbjct 13852 TAACAGCATTTGTTACATTTTTGCCAAGATATGCTTCGGCTGTCTCTTTCATTTTTGTTA 13793 Query 282525 AAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTT 282584 ||| ||| || |||| || ||| || || | || | |||| | |||||||||| Sbjct 13792 AAACCATGGAAGAAACTTCTTCGGGGAAAAAGGTTTTTGTTTCACCCTTGTATGATACTT 13733 Query 282585 CAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATT 282644 | | |||||| || |||| | || |||| ||||| | |||||| || || Sbjct 13732 TGATCTTTGGTTTGCCTGCATCATTCACTACCGTAAACGGCCAGTGTTTCATGTCACTTT 13673 Query 282645 GAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 282690 | || || |||| ||| | |||||||| ||||||||||| Sbjct 13672 GCACCGTTGCATCATCAAATCGACGACCAATTAGACGTTTTGCATC 13627 >seq3 Length=1948392 Score = 215 bits (238), Expect = 4e-50 Identities = 704/1076 (65%), Gaps = 26/1076 (2%) Strand=Plus/Plus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 || |||||||| |||| | || || |||||||| |||||||| | ||| || ||||| Sbjct 422049 GTAGATTTATCCACGGCGGATACGTTGAGAATACCGTTGGCATCGATATCGAAGGTGACC 422108 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 || || || || || || | | || ||||| || || | | || | || ||| Sbjct 422109 TCGATCTGGGGAACTCCGCGAGGCGCGGGTGGAATGCCGCTGAGTTCGAACTTACCAAGA 422168 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACA--- 281587 || || || || || | | |||||||| ||| ||| |||||| ||| |||| Sbjct 422169 AGGTTGTTGTCCTTGGTCATTGCGCGTTCACCTTCGTAAACTTGGAT--TAA-TACACCC 422225 Query 281588 GTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACA-AGGAATTGTTGTGTT 281646 | |||||| || | ||||| ||||| |||| ||| || | |||||| || || || Sbjct 422226 GGTTGATTGTCGGCGTAAGTCGTAAAGG-TCTGCGTTTGTTTCGTAGGAATGGTAGTATT 422284 Query 281647 TCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGT 281706 || | |||| ||||| | ||| || || || || | ||||||||| || ||||| Sbjct 422285 CCTTTTGATAAGCGCAGTCATGACACCGCCTGCAGTCTCAATACCAAGAGACAGCGGAGT 422344 Query 281707 GACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACA---AGAATAGC 281763 ||||| | |||| | || || | || | |||| || | | | || ||||| Sbjct 422345 AACATCGAGCAGGAGCAGATCCTGCACTT---CCTCAGATTTATCTCCGTGCAGGATAGC 422401 Query 281764 TGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTT 281823 ||| |||| || || || ||||| ||||| ||||||||||| | | | || | || Sbjct 422402 TGCCTGAACGGCTGCTCCGTATGCTACAGCCTCATCAGGATTGATGGACTTGTTCAATTC 422461 Query 281824 TTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTC 281882 ||||||||||||||| | || | || || | | ||| || ||||| | ||| || | Sbjct 422462 TTTACCATTGAAAAAGTCCTGTAGCAATTTCT-GAATCTTGGGGATACGGGTTGAACCGC 422520 Query 281883 CAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTT 281942 | || || || || ||||| | ||| | |||||||| ||| | || || ||| | Sbjct 422521 CGACCAAGACGATGTCATGTATCTGCGCTTTATCCATTTTAGCGTCGCGCAACGATTTCT 422580 Query 281943 CAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAG 282002 |||||||||| || | | | || | || | ||||| |||||||| || | | Sbjct 422581 CAACGGGTTCGAGGGTACCGCGGAAGAGATCGGCGCAAAGCTCTTCGAAACGCGCCCGGG 422640 Query 282003 TAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAG 282062 ||| | || | || ||||| || ||| ||||| | || || | | ||| | Sbjct 422641 TAATGGATGTATAGAAGTCGATTCCCTCATACAGCGAATCGATCTCGATACTGGCTTGCG 422700 Query 282063 TCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT 282122 | || || || |||| ||| || || || || || ||||| | | | || | || Sbjct 422701 TAGACGACGACAGTGTACGCTTCGCGCGCTCGCACGCTGTACGCAAACGACGGAGAGC-- 422758 Query 282123 TTGCTGATT-GA-TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAAC-ACACCATG 282179 ||| ||| || ||| |||| | |||||||| | ||||| || | || | | || Sbjct 422759 ACGCTTATTCGAGGTCAGATCTTTCTTATATTTACGTTTGAATTCCTGTACGAAATGAT- 422817 Query 282180 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 282239 | || | ||| || ||||| || || || ||||| | || | || | |||| | | Sbjct 422818 TGACCATACGGTTGTCAAAGTCCTCGCCACCCAAGTGGGTGTCACCAGCTGTAGACTTGA 422877 Query 282240 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATAT 282299 | | ||| | ||||| || | || || | | || ||| || |||||||| | || Sbjct 422878 CCTCGAAGATGCCATCCTCGATAGTCAGGATGGACACGTCAAAAGTGCCACCACCGAGAT 422937 Query 282300 CAAAAATAAGTACATTCATTTCTTTGTCTTGG--TTTTTATCAAGACCATACGCAAAAGC 282357 |||| ||||| || || || | ||| ||||||||||| || ||||||| || Sbjct 422938 CAAAGATAAGGACGTT--ACGCTCGCCCGTGGCCTTTTTATCAAGGCCGTACGCAATTGC 422995 Query 282358 AGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATC 282417 || || || || || ||||| || | || ||||| | || | || | || || || Sbjct 422996 GGCGGCGGTGGGCTCGTTAATGATACGTAATACATTCAAGCCCGAGATGGTACCAGCGTC 423055 Query 282418 TTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || || || | || || ||||| || || ||||| || || || || |||| Sbjct 423056 CTTCGTTGCCTGACGCTGCGAGTCGTTGAAGTAGGCAGGGACGGTGATCACTGCAT 423111 >seq36 Length=1033973 Score = 107 bits (118), Expect = 1e-17 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 637123 ATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCA 637182 ||||| || | |||| ||| || |||||||| ||||||| |||||||| | || || Sbjct 1001466 ATTGTAGACTTTTCTAGTCCCAACATTGCTAAGCAAATGCACGTTGGACATCTGAGGTCT 1001525 Query 637183 ACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGT 637242 ||||| || || || ||||| |||| |||||||| | || ||| |||| | | Sbjct 1001526 ACTATAATCGGCGACAGTATTTCTAGGTTATTAGAATATTTAGGCCACAATGTGTTGAGG 1001585 Query 637243 ATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289 || ||||| || || |||||||| || || || |||||||||||||| Sbjct 1001586 ATCAATCACGTAGGCGATTGGGGCACGCAGTTTGGTATGTTAATTGC 1001632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740308528105656