Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq160 183 6e-41 seq150 163 6e-35 seq239 109 1e-18 seq12 105 1e-17 >seq160 Length=383029 Score = 183 bits (202), Expect = 6e-41 Identities = 170/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| || |||| ||| ||||| ||||| || || ||||| || | | | || Sbjct 143040 ACGAAGAACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGTCC 142981 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || ||||||||||||||||| | ||| || || ||||| || ||||||||||| Sbjct 142980 GTCTTCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCTTCCTT 142921 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| || || || || || || |||||||||||| | ||||||||||| || || Sbjct 142920 ATCTTGGATTTTAGCCTTGACGTTCTCAATCGTATCAGACGCCTCTACTTCCAAGGTAAT 142861 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||||||||| |||||||| Sbjct 142860 GGTCTTGCCAGTAAGTGTCTTTACAAAAATCTGCAT 142825 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || || || ||||| ||||||||||| ||||| || || || | | | || Sbjct 143268 ACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGACAATGTGCGTCC 143209 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || ||||||||||||||||| | || || || |||||||| ||||||||||| Sbjct 143208 GTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTT 143149 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| ||||| || ||||| || |||||||| ||||| | ||| |||||||| || || Sbjct 143148 ATCCTGAATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGACTTCCAAGGTAAT 143089 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || | || || ||||| || ||||| Sbjct 143088 GGTTTTGCCGGTTAGAGTTTTGACAAAGATTTGCAT 143053 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||||||||| |||||||| ||||||||||||||||| || || || || | | ||| Sbjct 144635 CGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGACAGTGTGCGTCCG 144576 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || ||||| || ||||| | ||| ||||| || ||||| |||||||| ||| Sbjct 144575 TCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGAATTCCTTCTTTA 144516 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || || || || || || ||||| || ||| | || |||||||| || || Sbjct 144515 TCCTGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGACTTCCAATGTGATT 144456 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || | || || ||||| |||||||| Sbjct 144455 GTTTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 144421 Score = 156 bits (172), Expect = 8e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || || || ||||| |||||||||||||| || ||||| || | | | || Sbjct 143496 ACGAAGTACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATCTGACAATGTGCGTCC 143437 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || ||||||||||||||||| | || || || |||||||| |||||||| || Sbjct 143436 GTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTT 143377 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| || || || || || |||||||| || ||| | || ||||||| || || Sbjct 143376 ATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGAT 143317 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || | || || ||||| |||||||| Sbjct 143316 TGTTTTGCCGGTGAGAGTTTTGACAAAGATCTGCAT 143281 Score = 156 bits (172), Expect = 8e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| || || | ||||||||| || || ||||| || || || | | | || Sbjct 143724 ACGAAGAACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCC 143665 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| |||||||| ||||||||||| | || || ||||||||||| |||||||| || Sbjct 143664 GTCTTCGAGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTT 143605 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| || || || || || |||||||| || ||| | || |||||||| || || Sbjct 143604 ATCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAATGTGAT 143545 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || | || || ||||| |||||||| Sbjct 143544 TGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143509 Score = 154 bits (170), Expect = 3e-32 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| || || | ||| ||||| || || ||||| || || || | | | || Sbjct 143952 ACGAAGAACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCC 143893 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || ||||| ||||||||||| | |||||| ||||||||||| ||||||||||| Sbjct 143892 GTCTTCGAGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTT 143833 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| ||||| || || || || || ||||| || || | || |||||||| || || Sbjct 143832 ATCCTGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCAATGTGAT 143773 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || | || || ||||| |||||||| Sbjct 143772 TGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143737 Score = 132 bits (146), Expect = 9e-26 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| |||| ||||||||| ||||| || || || || || | | | ||||| || Sbjct 144173 ACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGTCCGTCCTCG 144114 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || || ||||| || ||||| | |||||| ||||||||||| |||||||||||||| ||| Sbjct 144113 AGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGA 144054 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || || || || || || ||||| || || | || ||||||| || || || || Sbjct 144053 ATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCANTGTGATTGTTTTN 143994 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || || || |||||||| Sbjct 143993 CCGGTNAGAGTTTTGACNAAGATCTGCAT 143965 Score = 132 bits (146), Expect = 9e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || || || ||||| ||||||||||| || || || || || || | | || Sbjct 144408 ACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGACAGTGTGCGTCC 144349 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || ||||| || ||||| | ||| || ||||| ||||| |||||||| || Sbjct 144348 GTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTT 144289 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| || || || ||||| ||||| || || || || | ||| || |||| ||| || Sbjct 144288 ATCCTGTATTTTGGCTTTGACATTCTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGAT 144229 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| | ||||| || ||||| ||||| Sbjct 144228 GGTTTTACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 >seq150 Length=403005 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | |||| ||| | ||| || || ||||||||||| || || ||||| || Sbjct 341402 CCTCCTCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAA 341343 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || |||| || ||||||||||| || || ||||| || | | || ||||| ||||| Sbjct 341342 AGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGA 341283 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || || ||||| || || || |||||||| || ||||| || ||| ||| Sbjct 341282 ATTCCTTCTTTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACT 341223 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 |||||||| || || || || || | || |||||||| |||||||| || Sbjct 341222 TCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCATGAT 341173 Score = 147 bits (162), Expect = 4e-30 Identities = 119/144 (83%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 || |||||| || || || ||||||||||| || || |||||||| ||| |||| || || Sbjct 342034 CAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAAAGAGTTCTTCCATC 341975 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| | ||||| |||||||||||||| | ||||||||| ||||| || ||||| || || Sbjct 341974 TTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGAATGCCTTCTTTGTC 341915 Query 82718 TTGAATCTTTGCTTTTACATTTTC 82741 ||| ||||| |||||||||||||| Sbjct 341914 TTGGATCTTAGCTTTTACATTTTC 341891 Score = 118 bits (130), Expect = 2e-21 Identities = 138/184 (75%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688 || || ||||| || || |||| || ||||| | ||||| |||||||||||||| | | Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526 Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 |||||||| ||||| || ||||| || ||||| || || |||||||||||||| || || Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTG 341466 Query 82749 TCATTAGG-TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 || | ||| || ||||| | || || || || || || | || || || || || || Sbjct 341465 TC-TGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTG 341407 Query 82808 CATT 82811 |||| Sbjct 341406 CATT 341403 >seq239 Length=229837 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 ||||||| ||||| || ||||| ||| | | || || || || || || || || |||| Sbjct 6124 CTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGA 6183 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | || | || ||||| || || || || ||||| ||||||||||| || || ||||||| Sbjct 6184 TGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTTT 6243 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| || || | ||| || || | || || ||||| || || | || || || | Sbjct 6244 CAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACGA 6303 Query 82801 ATATCTGCAT 82810 |||||||||| Sbjct 6304 ATATCTGCAT 6313 >seq12 Length=1501184 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| ||| |||||||| || |||| |||||| || ||||||||||| || || || Sbjct 683409 CCGCCTCGCAAGCGCAGAACCAAATGCAAAGTAGACTCCTTCTGTATATTGTAGTCCGAC 683468 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | || ||||| || | || |||||||| ||||| | |||||| ||||| || || Sbjct 683469 AGAGTCCTGCCGTCCTCCAACTGCTTTCCAGCGAAGATCAATCTTTGCTGATCAGGTGGA 683528 Query 82704 ATTCCT 82709 |||||| Sbjct 683529 ATTCCT 683534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981744727742484