Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq160 114 1e-20 seq239 113 4e-20 seq222 96.9 3e-15 >seq160 Length=383029 Score = 114 bits (126), Expect = 1e-20 Identities = 153/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||||| ||||||||||||||||| || || ||| |||||||||| Sbjct 144626 AAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGACAGTGTGCGTCCGTCCTCGAGC 144567 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | | ||| ||||| ||||| || ||||| || || || | Sbjct 144566 TGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGAATTCCTTCTTTATCC-TG-TA 144509 Query 133575 TTTTG--CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||||| ||||| | ||||| ||||| | | ||| || || | |||| ||||||| Sbjct 144508 TTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGACTTCCAATGTGATTGTTTTGC 144449 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || ||||| || || ||||||||| Sbjct 144448 CGGTGAGGGTTTTGACAAAGATCTGCATG 144420 Score = 113 bits (124), Expect = 4e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||||| || || ||||||||||| |||||||| || ||| ||| |||||| Sbjct 143486 AAATGTAGAGTTGATTCTTTCTGTATGTTGTAATCTGACAATGTGCGTCCGTCTTCGAGC 143427 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || | || | || ||||||||| ||||| || ||||| || || ||| Sbjct 143426 TGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTGGATT 143367 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| ||||| | | ||| || || | |||| ||||||||| Sbjct 143366 TTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGATTGTTTTGCCG 143307 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || |||||||| || || ||||||||| Sbjct 143306 GTGAGAGTTTTGACAAAGATCTGCATG 143280 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||||| || || |||||||| |||||||| || || ||| ||| |||||| Sbjct 143258 AAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCGAGC 143199 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || | || | || ||||||||| ||||| || |||||||| || ||| Sbjct 143198 TGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCC-TGAAT 143140 Query 133575 TTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| || | |||| || |||| | || || || | ||| | ||||||||| Sbjct 143139 TTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGACTTCCAAGGTAATGGTTTTGCC 143080 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| |||||||| || || || |||||| Sbjct 143079 GGTTAGAGTTTTGACAAAGATTTGCATG 143052 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||||| || ||||| || |||||||| || ||| ||| |||||| Sbjct 143030 AAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGTCCGTCTTCGAGC 142971 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || | || | | ||||||||| || || || |||||||| || ||| Sbjct 142970 TGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGGATT 142911 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| ||| || | | ||| || || | ||| | ||| ||||| Sbjct 142910 TTAGCCTTGACGTTCTCAATCGTATCAGACGCCTCTACTTCCAAGGTAATGGTCTTGCCA 142851 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGG 133662 || || || ||||| ||||||||||||| Sbjct 142850 GTAAGTGTCTTTACAAAAATCTGCATGG 142823 Score = 100 bits (110), Expect = 3e-16 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || || || ||||| || ||||| || || ||| |||||||||| Sbjct 144170 AAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGTCCGTCCTCGAGC 144111 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | | ||||| || ||||| || |||||||| || ||| Sbjct 144110 TGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATC-CTGAAT 144052 Query 133575 TTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| | ||| | | ||||| ||||||| | ||| || || | |||| ||||| || Sbjct 144051 TTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCANTGTGATTGTTTTNCC 143992 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| |||||||| || || |||||||| Sbjct 143991 GGTNAGAGTTTTGACNAAGATCTGCAT 143965 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || || || || || |||||||| || || ||| ||| |||||| Sbjct 143942 AAATGNANAGTNGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCGAGC 143883 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || | || | | ||||| || ||||| || |||||||| || ||| Sbjct 143882 TGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCC-TGAAT 143824 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || | | | | ||||| ||||||| | ||| || || | |||| |||||||| Sbjct 143823 TTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCAATGTGATTGTTTTGCC 143764 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| |||||||| || || ||||||||| Sbjct 143763 GGTTAGAGTTTTGACAAAGATCTGCATG 143736 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||||| || || || || || |||||||| || || ||| ||| ||||| Sbjct 143714 AAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCGAGT 143655 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || | || | || |||||| || ||||| || ||||| || || ||| Sbjct 143654 TGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTATCTTGGATT 143595 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| ||||| | | ||| || || | |||| ||||||||| Sbjct 143594 TTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAATGTGATTGTTTTGCCG 143535 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || |||||||| || || ||||||||| Sbjct 143534 GTTAGAGTTTTGACAAAGATCTGCATG 143508 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||||| || || |||||||| || ||||| || || ||| |||||||||| Sbjct 144398 AAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGACAGTGTGCGTCCGTCCTCGAGC 144339 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | | |||||| || ||||| || ||||| || || || Sbjct 144338 TGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTTATC-CTGTAT 144280 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || |||| | ||| | ||||| | | || || || | |||| |||||| || Sbjct 144279 TTTGGCTTTGACATTCTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGATGGTTTTACC 144220 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| || ||||| Sbjct 144219 TGTGAGTGTCTTGACGAATATTTGCAT 144193 >seq239 Length=229837 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| | ||||| |||||||| || || ||||| || |||||| Sbjct 6159 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTG 6218 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||| | | |||| ||||||| || ||||| || | ||| | | Sbjct 6219 TCTTGAATCTTGGCCTTCACATTTTCAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATG 6278 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGG 133662 || || || || |||||||| ||||| |||||||||| Sbjct 6279 GTCTTACCCGTGAGAGTTTTCACGAATATCTGCATGG 6315 >seq222 Length=252824 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 20330 AGCCCGCCGTTGCAACCCATGTCCACCGTGTCGCAGTCCACCAGCTGTTGCTCGCTCAAA 20389 || ||||||||||||||| |||| |||||||| ||||||| ||||||| || Sbjct 237402 AGACCGCCGTTGCAACCCTCATCCAAGTCATCGCAGTCGACCAGCTCTTGCTCGGACAG- 237344 Query 20390 TCGAC--CAGACGGTCGTACTTGATGGCGTACTGGCTCTCGAGCGCGCCCAGGCCCGCAA 20447 |||| ||| || | | |||||| || ||||||| ||||| ||| ||| || Sbjct 237343 -CGACAACAGCTGGCCATGCTTGATCGCATACTGGCCCTCGACATTGCCAGTTACCGAAA 237285 Query 20448 ACGCCCAGCACGCGCCGCACATGCGCTGGTCCTTGACCGAGGTGAC 20493 ||||||| |||| ||||||||||| ||| || || ||||| || || Sbjct 237284 ACGCCCAACACGAGCCGCACATGCCCTGATCTTTTACCGAAGTCAC 237239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483381183665440