Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq150 123 2e-23 seq160 113 3e-20 seq239 82.4 5e-11 >seq150 Length=403005 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || |||||||||||||| || || | | | || || | ||| || ||||||||| Sbjct 341366 TCTTTCTGGATGTTGTAATCGGAAAGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAA 341307 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||||||||||||||| | || | ||||||||||| |||||| | | ||||| Sbjct 341306 ATCAAACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATTTT-GGCCTTAACATT 341248 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||| || | ||| || || | ||||| ||||| || || | |||||||| Sbjct 341247 TTCTATGGTATCTGAAGCTTCGACTTCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTAC 341188 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 341187 AAAGATCTGCAT 341176 >seq160 Length=383029 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||||||||||| ||||| || |||||||| || || Sbjct 144419 CCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGAC 144360 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||||||| |||| || | || |||||||| || ||||| | ||||||||| | || Sbjct 144359 AGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGA 144300 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || ||||| | || |||| || | |||||| | ||| || Sbjct 144299 ATTCCTTCTTTATCCTGTATTTT-GGCTTTGACATTCTCGATGGTGTCCGACGCTTCGAC 144241 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||||||||| | || || || || || |||||| Sbjct 144240 CTCCAGAGTGATGGTTTTACCTGTGAGTGTCTTGACGAATATTTGCATA 144192 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||||||||||| ||||| |||||||||||||| || Sbjct 143507 CCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATCTGAC 143448 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||||| |||| || | |||||||| ||||| ||||| | |||||| ||| | || Sbjct 143447 AATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 143388 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || ||||| | | || | || | ||||| | || || Sbjct 143387 ATTCCTTCTTTATCTTGGATTTT-GGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGAC 143329 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || | ||||| |||||||||||||| Sbjct 143328 TTCCAGTGTGATTGTTTTGCCGGTGAGAGTTTTGACAAAGATCTGCAT 143281 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||||||||||| ||||| || || ||||| || || Sbjct 143279 CCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGAC 143220 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||||| |||| || | |||||||| ||||| ||||| | |||||| ||| | || Sbjct 143219 AATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGA 143160 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || |||||| | || || | || | ||| ||| | ||| || Sbjct 143159 ATTCCTTCCTTATCCTGAATTTT-GGCTTTGACGTTTTCAATGGTATCGGACGCTTCGAC 143101 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||| || |||| ||||| |||||||| ||||| Sbjct 143100 TTCCAAGGTAATGGTTTTGCCGGTTAGAGTTTTGACAAAGATTTGCAT 143053 Score = 100 bits (110), Expect = 2e-16 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| | ||| || ||||| || ||||| || || | ||||||| |||| || Sbjct 143945 ACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCG 143886 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| || ||||| ||||| | ||||||||| | || | ||||| || || | Sbjct 143885 AGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGA 143826 Query 33661 ATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| || ||| | ||| |||||| | || || || | ||||| ||||| Sbjct 143825 ATTTTGGCCTT-AACGTTCTCAATTGTGTCGGACGCCTCGACTTCCAATGTGATTGTTTT 143767 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| |||||||||||||| Sbjct 143766 GCCGGTTAGAGTTTTGACAAAGATCTGCAT 143737 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || ||||| | ||| || || || |||||||| || || | ||||||| |||| Sbjct 144176 AAGACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGTCCGTCC 144117 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | || |||||||| || ||||| | ||||||||| | || | ||||| || || Sbjct 144116 TCGAGCTGCTTTCCGGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCC 144057 Query 33658 GCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 |||||| || ||| | ||| |||||| | || || || | ||||| || Sbjct 144056 TGAATTTTGGCCTT-AACGTTCTCAATTGTGTCGGACGCCTCGACTTCCANTGTGATTGT 143998 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || | ||||| || ||||||||||| Sbjct 143997 TTTNCCGGTNAGAGTTTTGACNAAGATCTGCAT 143965 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||||| | |||| || || || ||||||||||| || Sbjct 143051 CCACCACGTAGACGAAGAACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCTGAC 142992 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||||| |||| || | |||||||| ||||| ||||| | |||||| ||| | || Sbjct 142991 AATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGA 142932 Query 33643 ACACCTTCTTTGTC 33656 | ||||| || || Sbjct 142931 ATTCCTTCCTTATC 142918 >seq239 Length=229837 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || || ||||| || ||||| || ||| | || |||| || || ||||| || | Sbjct 6124 CTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGA 6183 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 | | |||||||||||| | || | || || ||||| ||| || ||| |||| Sbjct 6184 TGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTC-ACATTT 6242 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | |||||| | |||||| |||| || || || ||||| || | ||||| || Sbjct 6243 TCAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACG 6302 Query 33739 AAGATCTGCATAGT 33752 || |||||||| || Sbjct 6303 AATATCTGCATGGT 6316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328677736139520