Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq150 138 3e-27 seq160 127 5e-24 seq239 86.0 1e-11 >seq150 Length=403005 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| |||||||||||||| ||| ||| || Sbjct 341179 CAGATCTTTGTAAAAACTCTTACTGGGAAAACCATCACTTTGGAAGTCGAAGCTTCAGAT 341238 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| || ||||| || |||||||||||| || || || Sbjct 341239 ACCATAGAAAATGTTAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAGCAG 341298 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || || ||||| ||||| | ||||||||||| || | ||||||||||| || Sbjct 341299 CGTTTGATTTTTGCCGGTAAGCAACTAGAAGATGGAAGAACCCTTTCCGATTACAACATC 341358 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| || || ||||||||||||||| | |||||| Sbjct 341359 CAGAAAGAATCCACACTTCACCTTGTTTTGCGCCTTCGA 341397 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| |||||||| ||| || || ||| | || ||||| || || || Sbjct 341906 AAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAACAACGTCTAATCTTTGCTGGTAAA 341965 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||||||| ||| | | ||||||||| |||||||||| || || || || Sbjct 341966 CAGTTGGAAGATGGAAGAACTCTTTCTGATTACAACATCCAGAAAGAATCCACACTACAT 342025 Query 206374 CTTGTTTTGAGACTTCG 206390 | |||||||||||||| Sbjct 342026 TTAGTTTTGAGACTTCG 342042 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||||||||| | || || || || |||||||||| || || |||| | ||| Sbjct 342042 CGAAGTCTCAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAAAGAGTT 341983 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||| ||| || || || ||||| || ||||||||| Sbjct 341982 CTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGA 341938 Score = 89.7 bits (98), Expect = 1e-12 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| |||||||| || || | ||||| || || ||||| | ||| Sbjct 341419 AAAACTCTCACTGGAAAAACCATTACCCTTGAAGTCGAGGCCTCAGACACTATAGAAAAT 341478 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| || ||||| |||||||| ||| || || ||| | || ||||| Sbjct 341479 GTAAAAGCTAAA-ATCCAAGACAAAGAAGGCATTCCTCCCGATCAACAACGTCTAATCTT 341537 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || || ||||||||||||||||| || | ||||||||||| Sbjct 341538 TGCTGGTAAACAGTTGGAAGATGGAAGAACCCTTTCCGATTACAAC 341583 >seq160 Length=383029 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| ||||| || ||||| ||||| |||||||| || |||||| Sbjct 144424 CAGATCTTTGTCAAAACCCTCACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCTGAC 144483 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || || || |||||||||||| |||||| || Sbjct 144484 ACTATTGAGAACGTCAAGGCCAAAATACAGGATAAAGAAGGAATTCCTCCGGACCAACAG 144543 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | |||||||||||||||||| | || || ||| | || || | || ||||| | Sbjct 144544 AGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTCGGACTACAATATA 144603 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || ||||| || | ||| || ||||||| Sbjct 144604 CAGAAAGAATCCACTCTGCATTTAGTTCTGCGACTTCG 144641 Score = 125 bits (138), Expect = 2e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| || || || ||||| ||||| ||||||| || || ||| Sbjct 143968 CAGATCTTNGTCAAAACTCTNACCGGNAAAACAATCACANTGGAAGTCGAGGCGTCCGAC 144027 Query 206233 ACAGTCGA-ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || | | ||| || ||| ||||| || || ||||||||| || || || Sbjct 144028 ACAATTGAGAACGTTAAGGCCAAA-ATTCAGGATAAGGAAGGAATTCCTCCAGATCAGCA 144086 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| | |||||||||||||||||| | || || ||| | || ||| | || |||||| | Sbjct 144087 AAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACATTGTCGGACTACAACAT 144146 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| || |||||| | || | || ||||| ||||| Sbjct 144147 CCAGAAGGAATCTACTTTGCATTTAGTCTTGAGGCTTCG 144185 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| ||||| || ||||| ||||| ||||||| || |||||| Sbjct 143284 CAGATCTTTGTCAAAACTCTCACCGGCAAAACAATCACACTGGAAGTCGAGGCGTCTGAC 143343 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| || ||| || || ||||| |||||||||||| || ||| || Sbjct 143344 ACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGACCAGCAG 143403 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || ||||| ||| | ||||| ||| | || ||| | ||||||||| | Sbjct 143404 AGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTACAACATA 143463 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 |||||||| || ||||| || Sbjct 143464 CAGAAAGAATCAACTCTACA 143483 Score = 122 bits (134), Expect = 2e-22 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || ||||| ||| || |||||||| ||||| |||||| |||| || ||| || ||| Sbjct 144196 CAAATATTCGTCAAGACACTCACAGGTAAAACCATCACTCTGGAGGTCGAAGCGTCGGAC 144255 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| ||| || || || |||||||||||| ||||| || Sbjct 144256 ACCATCGAGAATGTCAAAGCCAAA-ATACAGGATAAAGAAGGAATTCCTCCGGATCAGCA 144314 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| | |||||||||||||||||| | || || ||| | || || | || |||||| | Sbjct 144315 GAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTCGGACTACAACAT 144374 Query 206352 CCAGAAAGAGTCTACTCTTCA 206372 ||||||||| || ||||| || Sbjct 144375 CCAGAAAGAATCAACTCTACA 144395 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || ||||| ||||| |||||||| || |||||| Sbjct 143512 CAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCTGAC 143571 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| || ||| || || ||||| |||||||||||| || || || Sbjct 143572 ACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGATCAGCAG 143631 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || || || || | ||||| ||| | || ||| | || ||||| || Sbjct 143632 AGGTTGATCTTTGCTGGTAAACAACTCGAAGACGGACGCACATTGTCAGACTACAATATC 143691 Query 206353 CAGAAAGAGTCTACT 206367 || || || |||||| Sbjct 143692 CAAAAGGAATCTACT 143706 >seq239 Length=229837 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| ||||| ||||| || || || || || | || |||||| || ||| Sbjct 6310 CAGATATTCGTGAAAACTCTCACGGGTAAGACCATTACCCTTGAGGTGGAAGCCTCCGAC 6251 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||||||||| || || || || ||||| || Sbjct 6250 ACTATTGAAAATGTGAAGGCCAAGATTCAAGACAAGGAGGGGATCCCACCGGATCAGCAG 6191 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| |||||| | ||| | | || ||||| || Sbjct 6190 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTCTCTCTGACTACAATATC 6131 Query 206353 CAGAAAG 206359 ||||||| Sbjct 6130 CAGAAAG 6124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181721528530076