Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq160 104 2e-17 seq150 104 2e-17 >seq160 Length=383029 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||||| |||| ||||| || || |||||||| || || || |||||| Sbjct 143261 ACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCG 143202 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 |||||||| || | | |||| | | ||| || |||||||| || ||||| ||||| | Sbjct 143201 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCTGA 143142 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | ||| | ||||||| || || ||||| | || | ||||| Sbjct 143141 ATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGACTTCCAAGGTAATGGTTTTG 143082 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || |||||||| | || || |||||| Sbjct 143081 CCGGTTAGAGTTTTGACAAAGATTTGCATG 143052 Score = 102 bits (112), Expect = 8e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||||| | || || ||||| || |||||||| || || || ||||| Sbjct 143718 AACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTC 143659 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||| |||||||| | | |||| | | ||| ||||||||||| || ||||||||||| Sbjct 143658 GAGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTATCTTG 143599 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||| || | | ||| | || || | || ||| ||||| | || | ||||| Sbjct 143598 GATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAATGTGATTGTTTT 143539 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || |||||||| | || ||||||||| Sbjct 143538 GCCGGTTAGAGTTTTGACAAAGATCTGCATG 143508 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||||| |||| ||||| || |||||||| || || || || |||||| Sbjct 143489 ACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATCTGACAATGTGCGTCCGTCTTCG 143430 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 |||||||| || | | |||| | | ||| || |||||||| || ||||||||||| Sbjct 143429 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTGG 143370 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | ||| | || || | || ||| ||||| | || | ||||| Sbjct 143369 ATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGATTGTTTTG 143310 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || |||||||| | || ||||||||| Sbjct 143309 CCGGTGAGAGTTTTGACAAAGATCTGCATG 143280 Score = 100 bits (110), Expect = 3e-16 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | || | ||||||||| | | || || ||||| || |||||||| || || Sbjct 143958 ACGNANACGAAGAACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTCTGACAATGT 143899 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||||||||||||||| | | |||| | | || ||||||||||| || || Sbjct 143898 GCGTCCGTCTTCGAGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCC 143839 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| |||||| || | | || | || |||| || ||| ||||| | Sbjct 143838 TTCCTTATCCTGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCAA 143779 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||||| || || |||||||| | || ||||||||| Sbjct 143778 TGTGATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCATG 143736 >seq150 Length=403005 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 131942 ATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGC 132001 |||||||| ||| | ||| | |||||| | ||||||||| | | |||||||||| Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526 Query 132002 TGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTA 132061 |||||||| ||||| ||||||||||| || ||||| ||| | | ||| | ||| Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTG 341466 Query 132062 TCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGC 132121 || | | ||| ||||| | || | ||||| ||||| |||||||| | ||| || ||| Sbjct 341465 TCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGC 341406 Query 132122 AT 132123 || Sbjct 341405 AT 341404 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 |||||| ||||||| | || ||||| || |||||||| || | || | ||| Sbjct 342034 CAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAAAGAGTTCTTCCATC 341975 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| | ||||||||| | | |||||||||| |||||||| ||||| ||||||||||| || Sbjct 341974 TTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGAATGCCTTCTTTGTC 341915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476572141712160