Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq160 100 3e-16 seq150 100 3e-16 >seq160 Length=383029 Score = 100 bits (110), Expect = 3e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| ||||||| ||| | ||||| | |||||||| || Sbjct 143736 CATGCAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTC 143795 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || || ||| | || || |||||| ||||| || || || || || ||||| Sbjct 143796 CGACACAATTGAGAACGTTAAGGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCA 143855 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 ||||||| | || | | || ||||| |||||||| | | | ||||| || ||| Sbjct 143856 GCAAAGATTGATCTTTGCTGGTAAACAGCTCGAAGACGGACGCACATTGTCA--GACTAC 143913 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| ||||| ||||| || | ||||| || Sbjct 143914 AATATCCAAAAGGAATCNACTNTNCATTTGGT 143945 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| ||||| ||||||| ||| | || || | ||||||||||| Sbjct 143052 CATGCAAATCTTTGTCAAAACTCTAACCGGCAAAACCATTACCTTGGAAGTCGAAGCGTC 143111 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| || || | || ||| |||||| ||||| || || || || || || || Sbjct 143112 CGATACCATTGAAAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGACCA 143171 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 ||| || | || | | || ||||| |||||||| | | | ||||| || ||| Sbjct 143172 GCAGAGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCA--GACTAC 143229 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| || |||||||| || | ||||| || Sbjct 143230 AATATCCAGAAAGAATCAACTCTACATTTGGT 143261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| ||||||| ||| | ||||| | |||||||| || Sbjct 143508 CATGCAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTC 143567 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || ||||| |||||||| || || || || ||||| Sbjct 143568 TGACACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGATCA 143627 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 ||| || | || | | || |||||||||||||| | | | ||||| || ||| Sbjct 143628 GCAGAGGTTGATCTTTGCTGGTAAACAACTCGAAGACGGACGCACATTGTCA--GACTAC 143685 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| ||||| ||||| || | ||||| || Sbjct 143686 AATATCCAAAAGGAATCTACTTTACATTTGGT 143717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| | ||||| ||| | ||||| | |||||||| || | Sbjct 143965 ATGCAGATCTTNGTCAAAACTCTNACCGGNAAAACAATCACANTGGAAGTCGAGGCGTCC 144024 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || |||||| ||||| || || || || || |||||| Sbjct 144025 GACACAATTGAGAACGTTAAGGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAG 144084 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 |||||| | || | || ||| || || ||||| || | | | |||| || |||| Sbjct 144085 CAAAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACATTGTC--GGACTACA 144142 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 | || || || ||||| || | |||||||| || || Sbjct 144143 ACATCCAGAAGGAATCTACTTTGCATTTAGTCTTGAG 144179 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| | ||||| ||| | ||||| | |||||||| || Sbjct 144420 CATGCAGATCTTTGTCAAAACCCTCACCGGCAAAACAATCACATTGGAAGTCGAGGCGTC 144479 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| ||| | || || ||||| |||||||| || || || || || || Sbjct 144480 TGACACTATTGAGAACGTCAAGGCCAAAATACAGGATAAAGAAGGAATTCCTCCGGACCA 144539 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 || ||| | || | || ||| || || ||||| || | | | |||| | | ||| Sbjct 144540 ACAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTCGG--ACTAC 144597 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| || ||||||||||| | |||||||| Sbjct 144598 AATATACAGAAAGAATCCACTCTGCATTTAGT 144629 >seq150 Length=403005 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | ||||||||||| | || || ||| | ||||| | ||||||||||| Sbjct 341172 CATCATGCAGATCTTTGTAAAAACTCTTACTGGGAAAACCATCACTTTGGAAGTCGAAGC 341231 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||| || || | || || |||||| || ||||| || || || || || Sbjct 341232 TTCAGATACCATAGAAAATGTTAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCTGA 341291 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||| | | |||| | ||| || ||||| ||||||| |||| | |||||| Sbjct 341292 TCAGCAGCGTTTGATTTTTGCCGGTAAGCAACTAGAAGATGGAAGAACCCTTTCCGATTA 341351 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||| || || ||||||||||| |||| | || || | | ||||||||| Sbjct 341352 CAACATCCAGAAAGAATCCACACTTCACCTTGTTTTGCGCCTTCGAGGAGGAA 341404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445057924513920