Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq160 140 3e-28 seq150 134 1e-26 seq239 104 2e-17 seq144 102 8e-17 seq60 102 8e-17 >seq160 Length=383029 Score = 140 bits (154), Expect = 3e-28 Identities = 157/205 (77%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||||| || ||||| || || || |||||||| | ||| | || | ||| |||||||| Sbjct 143255 TGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGACAATG-TGCGTCCGTCTTCGAGCTG 143197 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || ||||| ||||| | |||||| || || || || ||||| || || |||||||| Sbjct 143196 TTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCTGAATTTT 143137 Query 134630 TTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 |||||| | | ||||| | ||||||| ||| || || | ||||||||||| |||| Sbjct 143136 GGCTTTGAC-GTTTTCAATGGTATCGGACGCTTCGACTTCCAAGGTAATGGTTTTGCCGG 143078 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 ||| |||||| || || |||||||| Sbjct 143077 TTAGAGTTTTGACAAAGATTTGCAT 143053 Score = 134 bits (148), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGA--GTCGTCGAGCT 134568 ||||| || ||||| || || ||||||||||| | || ||||| | ||| ||||||| Sbjct 144395 TGTAGAGTTGATTCTTTCTGGATGTTGTAGTC--CGACAGTGTGCGTCCGTCCTCGAGCT 144338 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 | || || || || ||||| | ||||||||| || || || |||||||| || || |||| Sbjct 144337 GCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTTATCCTGTATTT 144278 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 | |||||| || | ||||| |||| ||| || || ||||| ||||||||||| | Sbjct 144277 TGGCTTTGACATTCTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGATGGTTTTACCTG 144218 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 | | || || ||||| |||||||| Sbjct 144217 TGAGTGTCTTGACGAATATTTGCAT 144193 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 |||| || ||||||||||| || |||||||| | ||| ||| | ||| ||||| || Sbjct 143711 TGTAAAGTAGATTCCTTTTGGATATTGTAGTCTGACAA-TGTGCGTCCGTCTTCGAGTTG 143653 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || ||||| ||||| | ||||||||| || || || |||||||| ||||| ||||| Sbjct 143652 TTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTATCTTGGATTTT 143593 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| || | |||||| |||| || || || | || || ||||| ||||| Sbjct 143592 GGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAATGTGATTGTTTTGCCGGT 143533 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || |||||| || || || ||||| Sbjct 143532 TAGAGTTTTGACAAAGATCTGCAT 143509 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||||| || ||||| || || |||||||| || | ||| | || | ||| |||||||| Sbjct 143483 TGTAGAGTTGATTCTTTCTGTATGTTGTAATCTGACAATG-TGCGTCCGTCTTCGAGCTG 143425 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || ||||| ||||| | |||||| || || || || |||||||| ||||| ||||| Sbjct 143424 TTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTGGATTTT 143365 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| || | |||||| |||| || || || || || || ||||| ||||| Sbjct 143364 GGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGATTGTTTTGCCGGT 143305 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | |||||| || || || ||||| Sbjct 143304 GAGAGTTTTGACAAAGATCTGCAT 143281 Score = 122 bits (134), Expect = 9e-23 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 || ||||||||||| || |||||||| | ||| | || | ||| ||||||||||| || Sbjct 143933 GTNGATTCCTTTTGGATATTGTAGTCTGACAATG-TGCGTCCGTCTTCGAGCTGTTTACC 143875 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 ||||| ||||| | |||||||| || || || ||||| || || |||||||| || Sbjct 143874 AGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGAATTTTGGCCTT 143815 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 || || | ||||||||||| || || || | || || ||||| ||||||| ||| Sbjct 143814 AACGTTCTCAATTGTGTCGGACGCCTCGACTTCCAATGTGATTGTTTTGCCGGTTAGAGT 143755 Query 134696 TTTAACGAAAATTTGCAT 134713 ||| || || || ||||| Sbjct 143754 TTTGACAAAGATCTGCAT 143737 Score = 111 bits (122), Expect = 2e-19 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 || |||||||| || ||||||||||| | ||| | || | ||| |||||||| || || Sbjct 144161 GTAGATTCCTTCTGGATGTTGTAGTCCGACAATG-TGCGTCCGTCCTCGAGCTGCTTTCC 144103 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 || || ||||| | |||||||| || || || ||||| || || |||||||| || Sbjct 144102 GGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGAATTTTGGCCTT 144043 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 || || | ||||||||||| || || || | || || ||||| ||||| | ||| Sbjct 144042 AACGTTCTCAATTGTGTCGGACGCCTCGACTTCCANTGTGATTGTTTTNCCGGTNAGAGT 143983 Query 134696 TTTAACGAAAATTTGCAT 134713 ||| || || || ||||| Sbjct 143982 TTTGACNAAGATCTGCAT 143965 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 ||||||||||| || |||||||| || | ||| | || | ||| ||||||||||| || Sbjct 143021 GTGGATTCCTTCTGGATGTTGTAATCTGACAATG-TGCGTCCGTCTTCGAGCTGTTTTCC 142963 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 ||||| ||||| | |||||| || || || || ||||| || ||||| ||||| || Sbjct 142962 AGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTT 142903 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 ||| || | || || |||| || || || | |||||||| || || || | || Sbjct 142902 GACGTTCTCAATCGTATCAGACGCCTCTACTTCCAAGGTAATGGTCTTGCCAGTAAGTGT 142843 Query 134696 TTTAACGAAAATTTGCAT 134713 || || ||||| ||||| Sbjct 142842 CTTTACAAAAATCTGCAT 142825 >seq150 Length=403005 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| || ||||| || ||||| || |||||||| || || |||||||| ||| Sbjct 341404 TTCCTCCTCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGG 341345 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||| || || || || || || ||||||||||||||||||||||| || | Sbjct 341344 AAAGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAG 341285 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| || |||||||| || || || | || || || | ||| | Sbjct 341284 GAATTCCTTCTTTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGA 341225 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | ||| |||||||| || || | |||||| || || || ||||| Sbjct 341224 CTTCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCAT 341176 Score = 105 bits (116), Expect = 7e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | |||||| || ||||| || | ||| || |||||||| || ||||||||||| Sbjct 341558 TCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGAATGCCTTCTTTG 341499 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||| ||||| ||| || || | ||||| || | || || || || |||||| Sbjct 341498 TCTTGGATTTTAGCTTTTACATTTTCTATAGTGTCTGAGGCCTCGACTTCAAGGGTAATG 341439 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || || | |||||| ||||| ||||||||| Sbjct 341438 GTTTTTCCAGTGAGAGTTTTCACGAAGATTTGCATT 341403 >seq239 Length=229837 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| ||||| || || || | |||||||||||| || || || || || || Sbjct 6159 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTG 6218 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 |||||||| || || || || | |||||||| | |||||| || || |||||| Sbjct 6219 TCTTGAATCTTGGCCTTCACATTTTCAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATG 6278 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 || ||||| || | |||||| ||||| || ||||| ||||| Sbjct 6279 GTCTTACCCGTGAGAGTTTTCACGAATATCTGCATGGTGTTT 6320 >seq144 Length=417326 Score = 102 bits (112), Expect = 8e-17 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 8761 CAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGC 8820 |||||||| |||||| | || | || || ||||||||||||| ||| ||||| Sbjct 5949 CAATACGATATGTGGGACGTAAAACCGACAAATTTGTGGAATTGGGACGAATTGAAGGCA 5890 Query 8821 AAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACG 8880 ||||| || | |||| | | |||||||| ||| | ||| |||||| || ||| | Sbjct 5889 AAAATCGCGAAGCACGGTGTCAGAAATTCGCTTTTGATAGCTCCCATGCCTACGGCCTCC 5830 Query 8881 ACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTG 8940 || || || || | ||||| ||||| ||| | ||||| | ||| | ||| | || | Sbjct 5829 ACGGCGCAGATTTTAGGAAATAACGAGTCCATCGAGCCTTACACAAGCAATATCTATATT 5770 Query 8941 AGACGAGTGTTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATC 9000 ||||| ||| | | || || || | || | |||| ||| ||||||| ||||||| | Sbjct 5769 AGACGCGTGCTATCGGGAGAATTCGTTATCGTTAATCCGCATCTGATGCGAGACTTGACC 5710 Query 9001 G 9001 | Sbjct 5709 G 5709 >seq60 Length=814933 Score = 102 bits (112), Expect = 8e-17 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 8761 CAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGC 8820 |||||||| |||||| | || | || || ||||||||||||| ||| ||||| Sbjct 811824 CAATACGATATGTGGGACGTAAAACCGACAAATTTGTGGAATTGGGACGAATTGAAGGCA 811765 Query 8821 AAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACG 8880 ||||| || | |||| | | |||||||| ||| | ||| |||||| || ||| | Sbjct 811764 AAAATCGCGAAGCACGGTGTCAGAAATTCGCTTTTGATAGCTCCCATGCCTACGGCCTCC 811705 Query 8881 ACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTG 8940 || || || || | ||||| ||||| ||| | ||||| | ||| | ||| | || | Sbjct 811704 ACGGCGCAGATTTTAGGAAATAACGAGTCCATCGAGCCTTACACAAGCAATATCTATATT 811645 Query 8941 AGACGAGTGTTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATC 9000 ||||| ||| | | || || || | || | |||| ||| ||||||| ||||||| | Sbjct 811644 AGACGCGTGCTATCGGGAGAATTCGTTATCGTTAATCCGCATCTGATGCGAGACTTGACC 811585 Query 9001 G 9001 | Sbjct 811584 G 811584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505356982601120