Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq63 91.5 2e-13 seq144 87.8 2e-12 seq60 87.8 2e-12 seq108 84.2 3e-11 >seq63 Length=804878 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 || ||| ||||| ||| |||| |||||| | || | |||| ||||||||||||| || Sbjct 1837 CAGTCTGTCTGCGACACATTCGATGTATTTACACACGAGTTCAGAATTCATTCCTATTAG 1778 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 ||||| |||| || || || | || || |||||||| | ||||| || |||||| Sbjct 1777 ATTAACCGGTAACGCTTCTGTCAAGAATTCCTTTTCGATAACCACGGCATCCTGTATTAT 1718 Query 39565 CGATGTTACTACCTC--ATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 | | | || ||| || | |||| || | | |||||| ||||||| ||| ||| Sbjct 1717 CTGTTTCACGCGCTCGAATGA--CGGTTTTTGGACGATATGTTTGAACATTAGGCACGCG 1660 Query 39623 AAGTCACAATGTA 39635 ||||| ||| ||| Sbjct 1659 AAGTCGCAAAGTA 1647 Score = 89.7 bits (98), Expect = 7e-13 Identities = 157/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 39421 ttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCAT 39480 ||||| ||||||| | || |||||| ||||| |||||||| ||||| || ||| Sbjct 5264 TTTTTCGTATCCTAACGCAACAAACAATCTGTCTGCGACAAATTCGATGTAAGTGCACAT 5205 Query 39481 CATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTC 39540 | |||| ||||||||||||| || |||| |||| || || || | ||| || ||||| Sbjct 5204 GAGTTCAGAATTCATTCCTATCAGGCTAACCGGTAACGCTTCTGTCAAAAATTCCTTTTC 5145 Query 39541 GATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATC--AC-TCGGTGGATGCAA 39597 ||| | || || || |||| ||| |||| | || || || ||| || | Sbjct 5144 GATCACCACAGCATCCATTATAATC--TGTTTC-ACGCGTTCGAACGACGGCTTTTGAAC 5088 Query 39598 TAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 || ||||| ||||||| || ||||| |||||||| | |||| Sbjct 5087 TATGTGTTTGAACATTAGACACGCGAAATCACAATGCAATCCCT 5044 >seq144 Length=417326 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564 ||||| | | ||| |||| || ||||||||||||||||| || ||| ||||| ||| Sbjct 6872 GTATACAACTCTTCAAATTTGTCACCCCAAACATCATCCAAACCGGGAGATTCACGAGGA 6931 Query 69565 CACATCAATGACCACACATCATCATCCTTA---ACTCGTTTCATAAATAGATCGGGAATC 69621 ||||||| | | ||| || ||||| ||| || |||| |||||| ||||| || ||| Sbjct 6932 CACATCA--GGCTCCACTTC-TCATCGTTATATACACGTTCCATAAAAAGATCCGGTATC 6988 Query 69622 CAAAGAGCTATAAAGAGATCTCTGG 69646 || || || ||| | |||||||| Sbjct 6989 CACAGGGCATAAAATAAATCTCTGG 7013 >seq60 Length=814933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564 ||||| | | ||| |||| || ||||||||||||||||| || ||| ||||| ||| Sbjct 812747 GTATACAACTCTTCAAATTTGTCACCCCAAACATCATCCAAACCGGGAGATTCACGAGGA 812806 Query 69565 CACATCAATGACCACACATCATCATCCTTA---ACTCGTTTCATAAATAGATCGGGAATC 69621 ||||||| | | ||| || ||||| ||| || |||| |||||| ||||| || ||| Sbjct 812807 CACATCA--GGCTCCACTTC-TCATCGTTATATACACGTTCCATAAAAAGATCCGGTATC 812863 Query 69622 CAAAGAGCTATAAAGAGATCTCTGG 69646 || || || ||| | |||||||| Sbjct 812864 CACAGGGCATAAAATAAATCTCTGG 812888 >seq108 Length=566964 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/161 (74%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 68962 TCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATT 69021 || ||||| |||| | |||||| ||| ||||| || || || || |||||||| | Sbjct 477287 TCGTAAGGACCTTTTTCGGCAGCTATTTCGCAACTAGCTTCCAACGCGCCGTAATATAGC 477346 Query 69022 GTTTCGAAAATCTTCTTATTGAGATCTTGTGC-TTCTAGACTATCGAATGGATAATGTAA 69080 ||||||||||| | ||||||| || | || |||| | || || || |||| || | | Sbjct 477347 GTTTCGAAAATTTGAATATTGAGTTCGTTAGCGTTCTTG-CTTTCAAACGGAT-ATCTCA 477404 Query 69081 --AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 ||| ||||| ||||||||||| || || || |||||||| Sbjct 477405 TCAAG-ATAAACGCATCTGCCAAACCTTGTACGCCAATACC 477444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686852507823840