Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq160 123 2e-23 seq150 113 3e-20 >seq160 Length=383029 Score = 123 bits (136), Expect = 2e-23 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | ||| |||||||| || || || ||||| | ||| || Sbjct 143726 AGACGAAGAACCAAATGTAAAGTAGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGT 143667 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| ||||||||||| ||||| || || | ||| || || || || | ||| || Sbjct 143666 CCGTCTTCGAGTTGTTTACCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCT 143607 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 || ||| ||| ||| | || ||| | ||||||||| ||| ||| ||||||| | Sbjct 143606 TTATCTTGGAT-TTTGGCCTTGACGTTTTCAATTGTGTCAGACGC-CTCGACTTCCAATG 143549 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || ||||| ||||||| ||||| ||||| ||||||||| Sbjct 143548 TGATTGTTTTGCCGGTTAGAGTTTTGACAAAGATCTGCATG 143508 Score = 114 bits (126), Expect = 8e-21 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | |||| ||||| || ||||| |||||||| | ||| || Sbjct 143042 AGACGAAGAACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGT 142983 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || ||||| || ||||| || || | ||| ||||| || || | ||| ||| Sbjct 142982 CCGTCTTCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCTTCC 142923 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTT-CGCTCTCCACTTCCACGG 34666 || ||| ||| ||| | || ||| | ||| || || ||| ||| ||||||| || Sbjct 142922 TTATCTTGGAT-TTTAGCCTTGACGTTCTCAATCGTATCAGACGC-CTCTACTTCCAAGG 142865 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 | || || || || || | || || ||||||||||||||| || Sbjct 142864 TAATGGTCTTGCCAGTAAGTGTCTTTACAAAAATCTGCATGGTG 142821 Score = 102 bits (112), Expect = 5e-17 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||| || ||||| |||||| || || || || || || || || Sbjct 144647 CCACCACGAAGTCGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGAC 144588 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || |||| || || || || ||||| || || || | |||||||||||| || Sbjct 144587 AGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGA 144528 Query 34600 ACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||| || || | |||| || ||| | || ||| | ||| ||||| ||| ||| Sbjct 144527 ATTCCTTCTTTATCCTGT-AT-TTTGGCCTTGACGTTCTCAATAGTGTCAGACGC-CTCG 144471 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||||| || || ||||| ||||| | ||||| ||||| ||||||||| Sbjct 144470 ACTTCCAATGTGATTGTTTTGCCGGTGAGGGTTTTGACAAAGATCTGCATG 144420 >seq150 Length=403005 Score = 113 bits (124), Expect = 3e-20 Identities = 174/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| ||||| || | || || ||| || || || ||||| ||||| ||| Sbjct 341402 CCTCCTCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAA 341343 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| ||||| ||||||||||| || |||||||| || || || || Sbjct 341342 AGGGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGA 341283 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCCA 34657 | ||| || ||||| ||| ||| | ||||| | || || ||| ||| || | Sbjct 341282 ATTCCTTCTTTGTC-CTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCT-TCGA 341225 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGTAT 34717 |||||| || || ||||| || || | ||||| ||||| ||||||||| ||| | || Sbjct 341224 CTTCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCATGATGAATCTAA 341165 Query 34718 GAC 34720 ||| Sbjct 341164 GAC 341162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314704452711548