Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq160 147 2e-30 seq150 131 1e-25 seq239 122 8e-23 seq788 93.3 4e-14 >seq160 Length=383029 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| |||||||| |||||||| | || || | ||||| || |||| Sbjct 143508 CATGCAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTC 143567 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| ||||| ||||| |||||||| || || || ||||| Sbjct 143568 TGACACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGATCA 143627 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | || || |||||| | |||||| | || | || || ||||| Sbjct 143628 GCAGAGGTTGATCTTTGCTGGTAAACAACTCGAAGACGGACGCACATTGTCAGACTACAA 143687 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || |||||||||||| | ||| | || |||||||| Sbjct 143688 TATCCAAAAGGAATCTACTTTACATTTGGTTCTTCGTCTACGTGGTGGCAT 143738 Score = 145 bits (160), Expect = 7e-30 Identities = 185/252 (73%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 26968 AATTTTTTAATT-TATA-CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTAT 27025 |||| ||| ||| || | | |||||||||| |||||||| || || || |||||| | || Sbjct 142803 AATTGTTTTATTATAGAGCACCATGCAGATTTTTGTAAAGACACTTACTGGCAAGACCAT 142862 Query 27026 TACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAA 27085 ||| | ||||| || |||| || ||||||||| ||||| ||||| ||||| || Sbjct 142863 TACCTTGGAAGTAGAGGCGTCTGATACGATTGAGAACGTCAAGGCTAAAATCCAAGATAA 142922 Query 27086 AGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAG 27145 ||||| || ||||| || || ||| | || || | || || ||||| | |||||| | Sbjct 142923 GGAAGGAATTCCACCAGACCAGCAGAGATTGATCTTTGCTGGAAAACAGCTCGAAGACGG 142982 Query 27146 TTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 || | || ||||||||||| || ||||| || || || ||||||||| | ||| | Sbjct 142983 ACGCACATTGTCAGATTACAACATCCAGAAGGAATCCACTTTGCATTTGGTTCTTCGTCT 143042 Query 27206 GCGGGGTGGCAT 27217 || |||||||| Sbjct 143043 ACGTGGTGGCAT 143054 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| |||||||| |||||||| | || || || ||||| || |||| Sbjct 143280 CATGCAGATCTTTGTCAAAACTCTCACCGGCAAAACAATCACACTGGAAGTCGAGGCGTC 143339 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| ||||| ||||| |||||||| || || || || || Sbjct 143340 TGACACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGACCA 143399 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | || || ||||| | |||||| | || | || |||||||| Sbjct 143400 GCAGAGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTACAA 143459 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || || |||||||||| | ||| | || |||||||| Sbjct 143460 CATACAGAAAGAATCAACTCTACATTTGGTACTTCGTCTACGTGGTGGCAT 143510 >seq150 Length=403005 Score = 131 bits (144), Expect = 1e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || || || | ||||| |||||||| || | || Sbjct 341404 ATGCAAATCTTCGTGAAAACTCTCACTGGAAAAACCATTACCCTTGAAGTCGAGGCCTCA 341463 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| ||||| ||||||||||||||||| || ||||||||| Sbjct 341464 GACACTATAGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAA 341523 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| |||| | || || ||||| |||||||| | ||| |||||||||||||| Sbjct 341524 CAACGTCTAATCTTTGCTGGTAAACAGTTGGAAGATGGAAGAACCCTTTCCGATTACAAC 341583 Query 27168 AT 27169 || Sbjct 341584 AT 341585 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||||||||| || || || | || ||| | ||||| ||| | || Sbjct 341175 CATGCAGATCTTTGTAAAAACTCTTACTGGGAAAACCATCACTTTGGAAGTCGAAGCTTC 341234 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || || |||||||| ||||||||||| || || || ||||| Sbjct 341235 AGATACCATAGAAAATGTTAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCA 341294 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||||| || ||| | ||||| | ||| ||||||||||||| Sbjct 341295 GCAGCGTTTGATTTTTGCCGGTAAGCAACTAGAAGATGGAAGAACCCTTTCCGATTACAA 341354 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||| || || || || || | || | |||||||| Sbjct 341355 CATCCAGAAAGAATCCACACTTCACCTTGTTTTGCG 341390 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || ||||||||||||||||| || ||||||||||| ||| |||| | || || ||| Sbjct 341906 AAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAACAACGTCTAATCTTTGCTGGTAAA 341965 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || |||||||| | || |||| ||||||||||| || || || || || ||||| Sbjct 341966 CAGTTGGAAGATGGAAGAACTCTTTCTGATTACAACATCCAGAAAGAATCCACACTACAT 342025 Query 27192 TTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||| | | ||||| || Sbjct 342026 TTAGTTTTGAGACTTCGGGGAGG 342048 >seq239 Length=229837 Score = 122 bits (134), Expect = 8e-23 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 26983 ACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAAC 27042 || ||||||||||||| || |||||||| || || ||| | ||||| ||||| |||||| Sbjct 6318 ACACCATGCAGATATTCGTGAAAACTCTCACGGGTAAGACCATTACCCTTGAGGTGGAAG 6259 Query 27043 CGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102 | |||||| | ||||| | || || || ||||||||||| || || || ||||| | Sbjct 6258 CCTCCGACACTATTGAAAATGTGAAGGCCAAGATTCAAGACAAGGAGGGGATCCCACCGG 6199 Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 |||| |||||| | || | ||||||||| || |||| || Sbjct 6198 ATCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGA 6159 >seq788 Length=49962 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 49818 ATACGCACCCGGTAAAAGACATTGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGC 49877 ||||| ||||||||||||||||||| |||| | || || || || ||||| | ||||| Sbjct 3395 ATACGAACCCGGTAAAAGACATTGGCTGAAGGTAAAGAAGGATTATTTGTGTGGCGGCGC 3454 Query 49878 CATGGCCGATAGCGTTGATTTGGTGGTTTTGGGTGCATGGTACGGTTCTGGAAAAAAGGG 49937 ||||| ||||||| ||| | || || | |||||||||||||| | || || || || Sbjct 3455 AATGGCTGATAGCGCAGATCTCGTCGTGCTTGGTGCATGGTACGGCACAGGCAACAAAGG 3514 Query 49938 T 49938 | Sbjct 3515 T 3515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434882758437120