Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq150 165 2e-35 seq239 136 9e-27 seq160 136 9e-27 seq12 84.2 5e-11 >seq150 Length=403005 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||||||||| ||||| ||||| |||||||| ||||| | |||||| ||||||||||| Sbjct 341384 ACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAAAGGGTTCTTCCATCTTCT 341325 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 || ||||| || || || || | || || || |||||||||| |||||| |||||||| Sbjct 341324 AGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGA 341265 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || || || ||||| ||||| || || ||| || || | |||||| || || Sbjct 341264 ATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACTTCCAAAGTGATGGTTTTC 341205 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| |||||||| | |||||| Sbjct 341204 CCAGTAAGAGTTTTTACAAAGATCTGCAT 341176 Score = 136 bits (150), Expect = 9e-27 Identities = 140/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 210933 ATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGT 210992 ||||| ||||| | |||||| ||||||||||||| ||| || || || ||||| || ||| Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526 Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 ||||| || ||||||| ||||| ||||| ||||| || ||| || ||||| || ||| Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTG 341466 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 || ||| || || || || || || || ||||| |||||||| || || || | ||| Sbjct 341465 TCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGC 341406 Query 211113 ATT 211115 ||| Sbjct 341405 ATT 341403 Score = 125 bits (138), Expect = 2e-23 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || | || || ||||| ||||| |||||||| ||||| | ||| || Sbjct 342042 CGAAGTCTCAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAAAGAGTT 341983 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||||| ||| || || || ||||| || |||||||| || ||||||| ||| Sbjct 341982 CTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGAATGCCT 341923 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045 || ||||| |||||||| ||| || ||||| Sbjct 341922 TCTTTGTCTTGGATCTTAGCTTTTACATTTTC 341891 >seq239 Length=229837 Score = 136 bits (150), Expect = 9e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| ||||| || || || | || || | |||||| |||||||||||||| ||||||| Sbjct 6124 CTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGA 6183 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | || || || || || || || | || |||||||| || ||||| ||||| |||| Sbjct 6184 TGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTTT 6243 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || ||||| ||| ||| ||||| || || || ||||| ||||||||||| || || | Sbjct 6244 CAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACGA 6303 Query 211105 ACACCTGCAT 211114 | | |||||| Sbjct 6304 ATATCTGCAT 6313 >seq160 Length=383029 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||| || ||||| |||||||| || |||| || || | ||| || || |||||| Sbjct 144395 TGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGACAGTGTGCGTCCGTCCTCGAGCTGC 144336 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| | | || || || ||||||| |||||| || ||||| || || Sbjct 144335 TTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTTATCCTGTATTTTG 144276 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || || ||||||||||| || ||| ||||| |||||||| || || || ||| Sbjct 144275 GCTTTGACATTCTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGATGGTTTTACCTGTG 144216 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | ||||| Sbjct 144215 AGTGTCTTGACGAATATTTGCAT 144193 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 |||||| || || |||||||| ||||| | | || | ||| ||||| ||||| || || Sbjct 143022 AGTGGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGTCCGTCTTCGAGCTGTTTTCC 142963 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || ||||| | | || ||||| || |||| ||||||||| || ||||| || || Sbjct 142962 AGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGGATTTTAGCCTT 142903 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||||| || || || ||||| || || || | || || ||||| || || || || Sbjct 142902 GACGTTCTCAATCGTATCAGACGCCTCTACTTCCAAGGTAATGGTCTTGCCAGTAAGTGT 142843 Query 211097 CTTTACAAACACCTGCAT 211114 ||||||||| | |||||| Sbjct 142842 CTTTACAAAAATCTGCAT 142825 >seq12 Length=1501184 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||| || ||||| || || ||||| |||||||| || || || |||||||||| Sbjct 683659 CCTTCTTTATCCTGAATTTTGGCCTTCACATTTTCGATTGTATCCGATGCTTCAACCTCG 683718 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| ||||||||||| || ||||| | |||||| Sbjct 683719 AGGGTAATGGTCTTACCCGTGAGAGTTTTCACAAAAATCTGCAT 683762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159054632680940