Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq150 127 1e-24 seq160 125 5e-24 >seq150 Length=403005 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || || ||||| |||||| | ||||| || | | Sbjct 341176 ATGCAGATCTTTGTAAAAACTCTTACTGGGAAAACCATCACTTTGGAAGTCGAAGCTTCA 341235 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | |||| | |||| || ||||||||||| | || || ||||| Sbjct 341236 GATACCATAGAAAATGTTAAGGCCAAAA-TTCAGGACAAAGAAGGAATTCCTCCTGATCA 341294 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || |||||||| || ||||| ||||| | | | || | ||||||||| Sbjct 341295 GCAGCGTTTGATTTTTGCCGGTAAGCAACTAGAAGATGGAAGAACCCTTTCCGATTACAA 341354 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || ||||| |||||| | || | ||||| | | ||||||||| Sbjct 341355 CATCCAGAAAGAATCCACACTTCACCTTGTTTTGCGCCTTCGAGGAGGA 341403 Score = 118 bits (130), Expect = 7e-22 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||| ||||| |||||||| || || || ||||| || || | Sbjct 341403 AATGCAAATCTTCGTGAAAACTCTCACTGGAAAAACCATTACCCTTGAAGTCGAGGCCTC 341462 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| ||||| ||||| ||||||||||| | || || ||||| Sbjct 341463 AGACACTATAGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCA 341522 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| |||| ||||| || ||||| ||||||| | | | || | ||||||||| Sbjct 341523 ACAACGTCTAATCTTTGCTGGTAAACAGTTGGAAGATGGAAGAACCCTTTCCGATTACAA 341582 Query 23790 CAT 23792 ||| Sbjct 341583 CAT 341585 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||||||||| | || || |||||||| ||| |||| ||||| || ||||| ||||| Sbjct 341915 GACAAAGAAGGCATTCCTCCCGATCAACAACGTCTAATCTTTGCTGGTAAACAGTTGGAA 341974 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | | | ||| | ||||||||||| || ||||| |||||| ||||||||||||| Sbjct 341975 GATGGAAGAACTCTTTCTGATTACAACATCCAGAAAGAATCCACACTACATTTAGTTTTG 342034 Query 23824 AGGTTGCGAGGAGG 23837 || | || ||||| Sbjct 342035 AGACTTCGGGGAGG 342048 >seq160 Length=383029 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| ||||| || ||||| ||||| || ||||| || | | Sbjct 143281 ATGCAGATCTTTGTCAAAACTCTCACCGGCAAAACAATCACACTGGAAGTCGAGGCGTCT 143340 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||||| || |||||||| | || ||||| || Sbjct 143341 GACACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGACCAG 143400 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || ||||| || ||||||| |||||| || ||||||||| Sbjct 143401 CAGAGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTACAAC 143460 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| ||||| || || ||||||| || Sbjct 143461 ATACAGAAAGAATCAACTCTACATTTGGT 143489 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || ||||| ||||| | ||||| || | | Sbjct 144421 ATGCAGATCTTTGTCAAAACCCTCACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCT 144480 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || ||||| || |||||||| | || || || ||| Sbjct 144481 GACACTATTGAGAACGTCAAGGCCAAAATACAGGATAAAGAAGGAATTCCTCCGGACCAA 144540 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || ||||| || || || || |||| |||||| | || ||||| Sbjct 144541 CAGAGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTCGGACTACAAT 144600 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| ||||| ||||| | ||||||||| Sbjct 144601 ATACAGAAAGAATCCACTCTGCATTTAGTT 144630 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || || || || || || || || | ||||| || | | Sbjct 142825 ATGCAGATTTTTGTAAAGACACTTACTGGCAAGACCATTACCTTGGAAGTAGAGGCGTCT 142884 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || ||||| || || ||||| | || ||||| || Sbjct 142885 GATACGATTGAGAACGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCAGACCAG 142944 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || ||||| || ||||||| |||||| || ||||||||| Sbjct 142945 CAGAGATTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTACAAC 143004 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || ||||| || ||||| ||| Sbjct 143005 ATCCAGAAGGAATCCACTTTGCATTTGGTT 143034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337982592610448