Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq150 141 2e-28 seq239 127 5e-24 seq160 113 1e-19 seq1083 109 1e-18 seq1213 105 2e-17 seq236 105 2e-17 seq1931 100 7e-16 seq3879 93.3 1e-13 seq2879 93.3 1e-13 seq2414 93.3 1e-13 seq464 93.3 1e-13 seq5463 84.2 5e-11 seq605 84.2 5e-11 >seq150 Length=403005 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || |||||||| || ||||||||||| |||| |||||||||| | ||| Sbjct 341396 CGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAAAGGGTT 341337 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || ||||||||||| ||||| || || || || | || || || || || ||||| ||| Sbjct 341336 CTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCT 341277 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| || || || ||| ||| ||| ||||| ||||| | ||| || || || Sbjct 341276 TCTTTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACTTCCAAA 341217 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || | |||||||| || | ||||| Sbjct 341216 GTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCAT 341176 Score = 131 bits (144), Expect = 4e-25 Identities = 139/181 (77%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 |||||||||| | ||||| |||||||| | ||| || ||||| ||||| || |||||| Sbjct 341582 TTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGT 341523 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTC 225653 || ||||| ||||| ||||| ||||||||||| ||| || || ||| ||| || ||||| Sbjct 341522 TGATCGGGAGGAATGCCTTCTTTGTCTTGGAT-TTTAGCTTTTACATTTTCTATAGTGTC 341464 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || | || || || || || || | |||||| | ||| | |||||| Sbjct 341463 TGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGCAT 341404 Query 225714 T 225714 | Sbjct 341403 T 341403 Score = 131 bits (144), Expect = 4e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 |||||||||| || | || || ||||||||||| |||| |||||||| | | |||| Sbjct 342042 CGAAGTCTCAAAACTAAATGTAGTGTGGATTCTTTCTGGATGTTGTAATCAGAAAGAGTT 341983 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| | ||| || ||||| ||||| || |||||||| ||||| ||||| ||| Sbjct 341982 CTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGTTGTTGATCGGGAGGAATGCCT 341923 Query 225613 TCCTTGTCTTGGATCTT 225629 || |||||||||||||| Sbjct 341922 TCTTTGTCTTGGATCTT 341906 >seq239 Length=229837 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| |||| |||||| || | | ||| | ||||| || |||||||| || ||||||| Sbjct 6124 CTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGA 6183 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | || || || || || || || || || ||||||||||| ||||| ||||||| || Sbjct 6184 TGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTTT 6243 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 | || ||||| |||| |||||| || | || || ||||| ||||| | |||||| | || Sbjct 6244 CAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACGA 6303 Query 225704 ACACTTGCAT 225713 | | ||||| Sbjct 6304 ATATCTGCAT 6313 >seq160 Length=383029 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| ||| || | || |||||||||||||| || | |||||| || | || || Sbjct 144642 ACGAAGTCGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGACAGTGT 144583 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| | || |||||||| || ||||| || Sbjct 144582 GCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGAATTCC 144523 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || || || || || ||| || || || ||||| || | || || || || Sbjct 144522 TTCTTTATCCTGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGACTTCCAA 144463 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| || ||||| || | ||||| Sbjct 144462 TGTGATTGTTTTGCCGGTGAGGGTTTT 144436 Score = 100 bits (110), Expect = 7e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| |||||||| |||| ||||| || | || || | || || || |||||| Sbjct 144395 TGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGACAGTGTGCGTCCGTCCTCGAGCTGC 144336 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | || || || || || ||||| ||||| || || || || ||| Sbjct 144335 TTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTTATCCTGTAT-TTT 144277 Query 225631 TGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||| ||| ||||||||||| || | ||| || || | ||||| || || || || Sbjct 144276 GGCTTTGACATTCTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGATGGTTTTACCTGT 144217 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | || || | ||| | |||||| Sbjct 144216 GAGTGTCTTGACGAATATTTGCAT 144193 >seq1083 Length=38071 Score = 109 bits (120), Expect = 1e-18 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| || || Sbjct 1247 TTCTGGATGCCCAAAAAATCAGAATAAATGTTGGTAAAGGATTGGATCTCCTCCACCAGA 1188 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTA 370769 ||| |||||||| || |||| ||||| |||||||| Sbjct 1187 TGGGTCAAAAAATGAGGTGTTAAGATTTCGATCAGTTA 1150 >seq1213 Length=34482 Score = 105 bits (116), Expect = 2e-17 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||||||||||||||| |||||||| || || ||||| || || Sbjct 21485 TTCTGGATGTCCAAAAAATCAGAATAAATGTTGGTAAAGGATTGGGTCTCCTCCACCAGA 21426 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTA 370769 ||| |||||||| || |||| ||||| |||||||| Sbjct 21425 TGGGTCAAAAAATGAGGTGTTAAGATTTCGATCAGTTA 21388 >seq236 Length=233971 Score = 105 bits (116), Expect = 2e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || || ||||| ||||||||||| || || || ||||| Sbjct 16026 GAAGATTTGACCATCGGTAATGGAAATGACATTCGTAGGGATATAGGCGGACACGTCACC 16085 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTT 4582 ||||||||||| | ||| || || || || | ||||||||| || || |||| Sbjct 16086 GGCTTGTGTTTCAATAACGGGCAAAGCAGTCAATGATCCACCGCCCAAGTTTT 16138 >seq1931 Length=31091 Score = 100 bits (110), Expect = 7e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 || || || ||||||||||||||||||||||| |||||||| || || ||||| || ||| Sbjct 11290 TCTGGGTGTCCAAAAAATCAGAATAAATGTTGGTAAAGGATTGGGTCCCCTCCACCGGAT 11349 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || |||||||| ||||||| ||||| ||| ||||| Sbjct 11350 GGGTCAAAAAATAAGGTATTAAGATTTCGATCTGTTAA 11387 >seq3879 Length=11754 Score = 93.3 bits (102), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| ||||||||||||||||| | ||| |||||||| ||||| || || || || Sbjct 4052 TTCAGGATGTCCAAAAAATCAGAATAAGTNTTGGTAAAGGATTGGATCTCCCCCACCAGA 4111 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTA 370769 || || ||||| || |||| ||||| |||||||| Sbjct 4112 CGGGTCGAAAAATGAGGTGTTAAGATTTCGATCAGTTA 4149 >seq2879 Length=17814 Score = 93.3 bits (102), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||||||||| ||||||||||| ||||| ||||| || ||||| || | Sbjct 6125 TTCTGGGTGTCCAAAAAATCAAAATAAATGTTGGTAAAGAATAGGGTCTCCTCCACCCGC 6184 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTA 370769 ||| |||||||| |||||||| |||| ||| |||| Sbjct 6185 TGGGTCAAAAAATGAAGTATTAAGNTTTCGATCTGTTA 6222 >seq2414 Length=21403 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| ||||||||||||||||| ||||| |||||||| ||||| | || || || Sbjct 19308 TTCAGGATGTCCAAAAAATCAGAATAAGTGTTGGTAAAGGATTGGATCTCTCCCTCCAGA 19249 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| || ||||| || |||| ||||| |||| |||| Sbjct 19248 TGGGTCGAAAAATGAGGTGTTAAGATTTCGATCACTTAA 19210 >seq464 Length=88258 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||||||||||||||| ||||| || || || || || || || Sbjct 81811 TTCTGGATGTCCAAAAAATCAGAATAAATGTTGGTAAAGAATTGGGTCTCCCCCACCGGA 81870 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| |||||||| ||||||| |||| ||| ||||| Sbjct 81871 TGGGTCAAAAAACGAGGTATTAAGGTTTCGATCTGTTAA 81909 >seq5463 Length=1670 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||||| |||||||||||||| |||||||| || || || || || | Sbjct 531 TTCTGGGTGCGCAAAAAACCAGAATAAATGTTGGTAAAGGATTGGGTCTCCCCCACCGAA 472 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || |||||||| ||||||| ||||| ||||||||| Sbjct 471 GGGGTCAAAAAATGAGGTATTAAGATTTCGATCAGTTAA 433 >seq605 Length=67455 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| | |||||||||||||| ||||| || | || ||||||||||| ||||| Sbjct 57282 TTCTGGATGCCTGAAAAATCAGAATAAGTGTTGGTACAAAATTGGATCGCCTCCTCCTGA 57223 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | |||||||| |||||||| |||| ||| ||||| Sbjct 57222 AGAGTCAAAAAACGAAGTATTAAGGTTTCGATCTGTTAA 57184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192431028869864