Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq108 95.1 2e-14 seq144 86.0 9e-12 seq60 86.0 9e-12 >seq108 Length=566964 Score = 95.1 bits (104), Expect = 2e-14 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 77370 TCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATT 77429 || ||||| |||| | |||||| ||| ||||| |||||||| || |||||||| | Sbjct 477287 TCGTAAGGACCTTTTTCGGCAGCTATTTCGCAACTAGCTTCCAACGCGCCGTAATATAGC 477346 Query 77430 GTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAA- 77488 ||||||||||| | ||||||| || | || | | || |||||||||| || | | Sbjct 477347 GTTTCGAAAATTTGAATATTGAGTTCGTTAGCGTTCTTGCTTTCAAACGGAT-ATCTCAT 477405 Query 77489 -AAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACC 77527 ||| ||||| |||||||| || || || || |||||||| Sbjct 477406 CAAG-ATAAACGCATCTGCCAAACCTTGTACGCCAATACC 477444 >seq144 Length=417326 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||||| | | |||||||| || ||||||||||||||||| || || ||||| || Sbjct 6872 GTATACAACTCTTCAAATTTGTCACCCCAAACATCATCCAAACCGGGAGATTCACGAGGA 6931 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||||| ||| | |||| | | || |||| |||||| ||||| |||||||| Sbjct 6932 CACATCAGGCTCCACTTCTCATCGTTATATACACGTTCCATAAAAAGATCCGGTATCCAC 6991 Query 78033 AGAGCAATAAATAGATCTCGGG 78054 || ||| ||||| ||||| || Sbjct 6992 AGGGCATAAAATAAATCTCTGG 7013 >seq60 Length=814933 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||||| | | |||||||| || ||||||||||||||||| || || ||||| || Sbjct 812747 GTATACAACTCTTCAAATTTGTCACCCCAAACATCATCCAAACCGGGAGATTCACGAGGA 812806 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||||| ||| | |||| | | || |||| |||||| ||||| |||||||| Sbjct 812807 CACATCAGGCTCCACTTCTCATCGTTATATACACGTTCCATAAAAAGATCCGGTATCCAC 812866 Query 78033 AGAGCAATAAATAGATCTCGGG 78054 || ||| ||||| ||||| || Sbjct 812867 AGGGCATAAAATAAATCTCTGG 812888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694611871891840