Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq150 129 1e-24 seq160 122 2e-22 seq239 104 5e-17 >seq150 Length=403005 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| ||||| || || ||||| |||||||||||||||| | ||||| ||||||||| Sbjct 341384 ACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTAATCGGAAAGGGTTCTTCCATCTTCT 341325 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || ||||| || || | | |||||| || | | |||||||| || || ||| Sbjct 341324 AGTTGCTTACCGGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGA 341265 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| || ||| | |||| | | |||||| || ||||| | ||| || ||||| Sbjct 341264 ATTTTGGCCTTAACATTTTCTATGGTATCTGAAGCTTCGACTTCCAAAGTGATGGTTTTC 341205 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || |||| |||||| Sbjct 341204 CCAGTAAGAGTTTTTACAAAGATCTGCAT 341176 Score = 114 bits (126), Expect = 3e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 151923 ATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTC 151982 ||||||||||||| | ||||| |||||||| | ||| || || ||||| || | Sbjct 341585 ATGTTGTAATCGGAAAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGACGT 341526 Query 151983 TGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTG 152042 || || || | | || ||||| || ||||| ||||| ||| ||| | |||| || Sbjct 341525 TGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAGTG 341466 Query 152043 TCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGC 152102 ||||| ||| |||||||| ||||| ||||| || |||||||| |||||||||| ||| Sbjct 341465 TCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTTGC 341406 Query 152103 ATT 152105 ||| Sbjct 341405 ATT 341403 >seq160 Length=383029 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| ||||| || ||||| || ||||||||||| | || || | || ||| Sbjct 143492 AGTACCAAATGTAGAGTTGATTCTTTCTGTATGTTGTAATCTGACAATGTGCGTCCGTCT 143433 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| | |||||||||||| | | |||||||| || ||| Sbjct 143432 TCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCT 143373 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||||| | || | |||| || ||| ||||| || || || ||| Sbjct 143372 TGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGACGCCTCGACTTCCAGTGTGATTGTT 143313 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| || || |||| |||||| Sbjct 143312 TTGCCGGTGAGAGTTTTGACAAAGATCTGCAT 143281 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| ||||| || ||||| ||||||||||| || | | || | || || Sbjct 144404 AGTACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGACAGTGTGCGTCCGTCC 144345 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| | |||||||| |||| | |||||||| || | Sbjct 144344 TCGAGCTGCTTT--CCGGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTTAT 144287 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || ||||| ||||||| |||| | | |||| || || || || ||||| || | Sbjct 144286 CCTGTATTTTGGCTTTGACATTCTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGATGG 144227 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||| ||||| ||||| | ||||| Sbjct 144226 TTTTACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| ||||| || ||||| ||||| ||||| || | || || | || ||| Sbjct 143264 AGTACCAAATGTAGAGTTGATTCTTTCTGGATATTGTAGTCTGACAATGTGCGTCCGTCT 143205 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| | |||||||||||| | | ||||||||||| || Sbjct 143204 TCGAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCC 143145 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| |||||| | || | | | || || || ||||| | ||||| ||| Sbjct 143144 TGAATTTTGGCTTTGACGTTTTCAATGGTATCGGACGCTTCGACTTCCAAGGTAATGGTT 143085 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| || || |||| ||||| Sbjct 143084 TTGCCGGTTAGAGTTTTGACAAAGATTTGCAT 143053 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | ||| || || || |||||||||||||| | || || | || ||| Sbjct 143036 AGAACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGTCCGTCT 142977 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| | ||||||||||| | | ||||||||||| ||| Sbjct 142976 TCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCT 142917 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||||| |||| | | || || ||||||||| | ||||| || Sbjct 142916 TGGATTTTAGCCTTGACGTTCTCAATCGTATCAGACGCCTCTACTTCCAAGGTAATGGTC 142857 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| || || | |||||| Sbjct 142856 TTGCCAGTAAGTGTCTTTACAAAAATCTGCAT 142825 Score = 102 bits (112), Expect = 2e-16 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || || | ||| | ||| | |||||| || || ||||||||||| || | || || | Sbjct 144182 AGCCTCAAGACTAAATGCAAAGTAGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGT 144123 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 || || || || ||||| ||||||||||| | || ||||| || | | ||||||| Sbjct 144122 CCGTCCTCGAGCTGCTTT--CCGGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCTT 144065 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || |||||||| || || |||| | |||| || ||| ||||| | | Sbjct 144064 CCTTATCCTGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCANTG 144005 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| || || ||||| || || |||| |||||| Sbjct 144004 TGATTGTTTTNCCGGTNAGAGTTTTGACNAAGATCTGCAT 143965 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || || | ||| ||||| || ||||| || || ||||| || | | || | Sbjct 144638 AGTCGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGACAGTGTGCGT 144579 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 || || || || ||||| ||||||||||| | ||||| ||||||| | ||||||| Sbjct 144578 CCGTCCTCGAGCTGCTTT--CCGGCGAAGATCAATCTCTGTTGGTCCGGAGGAATTCCTT 144521 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 | || || || ||||| ||||| |||| | |||| || ||| ||||| | | Sbjct 144520 CTTTATCCTGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGACTTCCAATG 144461 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || |||||||| ||||| || || || |||| |||||| Sbjct 144460 TGATTGTTTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 144421 Score = 96.9 bits (106), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | ||| || || |||||||| ||||| || | || || | || ||| Sbjct 143948 AGAACCAAATGNANAGTNGATTCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCT 143889 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| | || ||||| || | | ||||||||||| || Sbjct 143888 TCGAGCTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCC 143829 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || || |||| | |||| || ||| ||||| | || || ||| Sbjct 143828 TGAATTTTGGCCTTAACGTTCTCAATTGTGTCGGACGCCTCGACTTCCAATGTGATTGTT 143769 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| || || |||| |||||| Sbjct 143768 TTGCCGGTTAGAGTTTTGACAAAGATCTGCAT 143737 >seq239 Length=229837 Score = 104 bits (114), Expect = 5e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974 |||| ||||| ||||| || | | ||| | ||||| || || || |||||||||| Sbjct 6124 CTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGA 6183 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | || | |||||| |||| | ||| || ||||| |||||||| || || ||| | | Sbjct 6184 TGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTTT 6243 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | |||| || || || ||||| ||||| || || ||||||||||| ||||||| Sbjct 6244 CAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACGA 6303 Query 152095 AGACCTGCAT 152104 | | |||||| Sbjct 6304 ATATCTGCAT 6313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153723880495076