Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq239 125 5e-24 seq150 125 5e-24 seq160 118 8e-22 >seq239 Length=229837 Score = 125 bits (138), Expect = 5e-24 Identities = 146/196 (74%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 44148 CCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||| ||||| || | ||| || | || ||||||||||| ||||| ||| Sbjct 6123 CCTTTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAG 6182 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | |||||||||||| | || | || ||||| || ||||| ||||| || Sbjct 6183 ATGAGACGCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTT 6242 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||||| || ||||||||| | ||||| ||||| |||||||| || |||||| Sbjct 6243 TCAATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACG 6302 Query 44327 AAGATTTGCATGATGT 44342 || || |||||| ||| Sbjct 6303 AATATCTGCATGGTGT 6318 >seq150 Length=403005 Score = 125 bits (138), Expect = 5e-24 Identities = 173/240 (72%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | ||| || |||||||| ||| || || ||||||||||| Sbjct 341409 TTGCATTCCTCCTCGAAGGCGCAAAACAAGGTGAAGTGTGGATTCTTTCTGGATGTTGTA 341350 Query 44164 ATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 ||||| || || || | || || || ||||| |||||||| ||||||||||||||| Sbjct 341349 ATCGGAAAG--GGTTCTTCCATCTTCTAGTTGCTTACCGGCAAAAATCAAACGCTGCTGA 341292 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | ||| | ||||| || ||| || || ||| | || ||||||| || | Sbjct 341291 TCAGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTAACATTTTCTATGGTATCTGAA 341232 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | ||| || |||| || || || || || || || || || || ||||| ||||||||| Sbjct 341231 GCTTCGACTTCCAAAGTGATGGTTTTCCCAGTAAGAGTTTTTACAAAGATCTGCATGATG 341172 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 44156 ATGTTGTAATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAAC 44213 ||||||||||||| || || || | || |||| ||| || || |||||||| | || Sbjct 341585 ATGTTGTAATCGGAAAG--GGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATTAGAC 341528 Query 44214 GCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGG 44273 | || ||||| | ||| | ||||| || || || || || | || |||| | Sbjct 341527 GTTGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCTATAG 341468 Query 44274 TGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTT 44333 |||| | || || || || | ||||| || ||||| ||||| || ||||||||||||| Sbjct 341467 TGTCTGAGGCCTCGACTTCAAGGGTAATGGTTTTTCCAGTGAGAGTTTTCACGAAGATTT 341408 Query 44334 GCAT 44337 |||| Sbjct 341407 GCAT 341404 >seq160 Length=383029 Score = 118 bits (130), Expect = 8e-22 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || || ||||||||||| || | ||| ||| |||| || |||||||| ||||| ||| Sbjct 144383 TCTTTCTGGATGTTGTAGTCCGACAGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAG 144324 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| | ||||||||| | ||| | ||||| || ||| ||| || |||| | || Sbjct 144323 ATCAATCTCTGCTGATCCGGAGGAATTCCTTCTTTATCCTGTAT-TTTGGCTTTGACATT 144265 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||| | | ||| ||||||| || || || || || ||||| ||||| || Sbjct 144264 CTCGATGGTGTCCGACGCTTCGACCTCCAGAGTGATGGTTTTACCTGTGAGTGTCTTGAC 144205 Query 44326 GAAGATTTGCAT 44337 ||| |||||||| Sbjct 144204 GAATATTTGCAT 144193 Score = 104 bits (114), Expect = 2e-17 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||||||||| || | | | ||| |||| || |||||||| ||||| ||| Sbjct 144155 TCCTTCTGGATGTTGTAGTCCGACAATGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAG 144096 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| | |||||||||| ||| | |||||||| ||| | | || || | || ||| Sbjct 144095 ATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCC-TGAATTTTGGCCTTAACGTT 144037 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||||| | || || |||| || || || || || || || || || || Sbjct 144036 CTCAATTGTGTCGGACGCCTCGACTTCCANTGTGATTGTTTTNCCGGTNAGAGTTTTGAC 143977 Query 44326 GAAGATTTGCAT 44337 ||||| ||||| Sbjct 143976 NAAGATCTGCAT 143965 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || || ||||| ||||| || | | | ||| |||| || ||||| || || |||||| Sbjct 143243 TCTTTCTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAG 143184 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| | |||||| |||| ||| | |||||||| ||| || || |||| | ||| Sbjct 143183 ATCAACCTCTGCTGGTCTGGAGGAATTCCTTCCTTATCCTGAATTTTG-GCTTTGACGTT 143125 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||| |||| | ||| || |||| ||||| || || || || || || || || Sbjct 143124 TTCAATGGTATCGGACGCTTCGACTTCCAAGGTAATGGTTTTGCCGGTTAGAGTTTTGAC 143065 Query 44326 GAAGATTTGCATG 44338 |||||||||||| Sbjct 143064 AAAGATTTGCATG 143052 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||||||||| ||||| || | | | ||| |||| || ||||| || || |||||| Sbjct 143927 TCCTTTTGGATATTGTAGTCTGACAATGTGCGTCCGTCTTCGAGCTGTTTACCAGCAAAG 143868 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| | |||||||||| ||| | |||||||| ||| | | || || | || ||| Sbjct 143867 ATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCC-TGAATTTTGGCCTTAACGTT 143809 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||||| | || || |||| || || || || || || || || || || Sbjct 143808 CTCAATTGTGTCGGACGCCTCGACTTCCAATGTGATTGTTTTGCCGGTTAGAGTTTTGAC 143749 Query 44326 GAAGATTTGCATG 44338 ||||| |||||| Sbjct 143748 AAAGATCTGCATG 143736 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| |||||||||||||| | | | ||| |||| || ||||| || || |||||| Sbjct 143015 TCCTTCTGGATGTTGTAATCTGACAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAG 142956 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| | |||||| |||| || | |||||||| || || || || | | ||| Sbjct 142955 ATCAATCTCTGCTGGTCTGGTGGAATTCCTTCCTTATCTTGGAT-TTTAGCCTTGACGTT 142897 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || || || | | || || |||| ||||| ||||| || || || ||||| || Sbjct 142896 CTCAATCGTATCAGACGCCTCTACTTCCAAGGTAATGGTCTTGCCAGTAAGTGTCTTTAC 142837 Query 44326 GAAGATTTGCATGATG 44341 || || |||||| || Sbjct 142836 AAAAATCTGCATGGTG 142821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359961636317052