Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq160 178 3e-39 seq150 163 7e-35 seq239 143 6e-29 >seq160 Length=383029 Score = 178 bits (196), Expect = 3e-39 Identities = 160/201 (80%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || |||||||| ||||| ||||| || ||||| ||| || ||| Sbjct 144196 CAAATATTCGTCAAGACACTCACAGGTAAAACCATCACTCTGGAGGTCGAAGCGTCGGAC 144255 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| |||||| || || ||||| ||||||||||| |||||||| ||||| Sbjct 144256 ACCATCGAGAATGTCAAAGCCAAAATACAGGATAAAGAAGGAATTCCTCCGGATCAGCAG 144315 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| |||||||| || ||| | || || | || || ||| || Sbjct 144316 AGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTCGGACTACAACATC 144375 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||||||||| || ||| Sbjct 144376 CAGAAAGAATCAACTCTACAT 144396 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| ||||| || ||||| ||||| | || || || || ||| Sbjct 144424 CAGATCTTTGTCAAAACCCTCACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCTGAC 144483 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| || || ||||| ||||||||||| ||||||||||| || Sbjct 144484 ACTATTGAGAACGTCAAGGCCAAAATACAGGATAAAGAAGGAATTCCTCCGGACCAACAG 144543 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| |||||||| || ||| | || || | || || || | Sbjct 144544 AGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACACTGTCGGACTACAATATA 144603 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || |||||||| || |||||| | ||| || |||| Sbjct 144604 CAGAAAGAATCCACTCTGCATTTAGTTCTGCGACT 144638 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || || ||||| || ||| | || || ||| || || Sbjct 143056 CAAATCTTTGTCAAAACTCTAACCGGCAAAACCATTACCTTGGAAGTCGAAGCGTCCGAT 143115 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| || |||||||| || |||||||| ||||| |||||||| Sbjct 143116 ACCATTGAAAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGACCAGCAG 143175 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || ||||||||||||||||| ||| | || | | || || || || Sbjct 143176 AGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGACTACAATATC 143235 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||||||||| || ||| Sbjct 143236 CAGAAAGAATCAACTCTACAT 143256 Score = 140 bits (154), Expect = 8e-28 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||||| || || ||||| ||||| | || || || || ||| Sbjct 143968 CAGATCTTNGTCAAAACTCTNACCGGNAAAACAATCACANTGGAAGTCGAGGCGTCCGAC 144027 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || || |||||||| || |||||||| ||||| || |||||| Sbjct 144028 ACAATTGAGAACGTTAAGGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAGCAA 144087 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| |||||||| || ||| | || | | || || ||| || Sbjct 144088 AGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACATTGTCGGACTACAACATC 144147 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || ||||| || ||||| | || ||||| || Sbjct 144148 CAGAAGGAATCTACTTTGCATTTAGTCTTGAGGCT 144182 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||||||||| || ||||| ||||| || || || || || ||| Sbjct 143284 CAGATCTTTGTCAAAACTCTCACCGGCAAAACAATCACACTGGAAGTCGAGGCGTCTGAC 143343 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| || || || || ||||||||||| ||||| |||||||| Sbjct 143344 ACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGACCAGCAG 143403 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || ||||||||||||||||| ||| | || | | ||||| ||| | Sbjct 143404 AGGTTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTACAACATA 143463 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||||||||| || ||| Sbjct 143464 CAGAAAGAATCAACTCTACAT 143484 Score = 123 bits (136), Expect = 6e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||||| || || ||||| ||||| | || || || || ||| Sbjct 143740 CAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCCGAC 143799 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || || |||||||| || |||||||| ||||| || |||||| Sbjct 143800 ACAATTGAGAACGTTAAGGCCAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCAGCAA 143859 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || |||||||||||||| ||| | || | | || || || || Sbjct 143860 AGATTGATCTTTGCTGGTAAACAGCTCGAAGACGGACGCACATTGTCAGACTACAATATC 143919 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||| || | ||| | ||| Sbjct 143920 CAAAAGGAATCNACTNTNCATTTGGTT 143946 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || || || || || || || ||| | || || || || || Sbjct 142828 CAGATTTTTGTAAAGACACTTACTGGCAAGACCATTACCTTGGAAGTAGAGGCGTCTGAT 142887 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| || || || || || |||||||| || || |||||||| Sbjct 142888 ACGATTGAGAACGTCAAGGCTAAAATCCAAGATAAGGAAGGAATTCCACCAGACCAGCAG 142947 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||||||||||||||| ||| | || | | ||||| ||| || Sbjct 142948 AGATTGATCTTTGCTGGAAAACAGCTCGAAGACGGACGCACATTGTCAGATTACAACATC 143007 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || ||||| | ||| Sbjct 143008 CAGAAGGAATCCACTTTGCATTTGGTT 143034 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||||| || || ||||| ||||| | || || || || ||| Sbjct 143512 CAGATCTTTGTCAAAACTCTAACCGGCAAAACAATCACATTGGAAGTCGAGGCGTCTGAC 143571 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| || || || || ||||||||||| ||||| || ||||| Sbjct 143572 ACAATTGAAAACGTCAAGGCCAAAATCCAAGATAAAGAAGGAATTCCTCCAGATCAGCAG 143631 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || || ||||| |||||||| ||| | || | | || || || || Sbjct 143632 AGGTTGATCTTTGCTGGTAAACAACTCGAAGACGGACGCACATTGTCAGACTACAATATC 143691 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||| || | ||| | ||| Sbjct 143692 CAAAAGGAATCTACTTTACATTTGGTT 143718 >seq150 Length=403005 Score = 163 bits (180), Expect = 7e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||||| || || ||||| ||||| | || || ||| ||||| Sbjct 341179 CAGATCTTTGTAAAAACTCTTACTGGGAAAACCATCACTTTGGAAGTCGAAGCTTCAGAT 341238 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || || |||||||||||||||||||| ||||| || ||||| Sbjct 341239 ACCATAGAAAATGTTAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAGCAG 341298 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| || || || ||||||||||| || ||| ||||||| ||| || Sbjct 341299 CGTTTGATTTTTGCCGGTAAGCAACTAGAAGATGGAAGAACCCTTTCCGATTACAACATC 341358 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || |||||||| ||||| || ||||||||| Sbjct 341359 CAGAAAGAATCCACACTTCACCTTGTTTTG 341388 Score = 152 bits (168), Expect = 1e-31 Identities = 140/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||||||||| |||||||| || ||||| || || || ||||||| Sbjct 341407 CAAATCTTCGTGAAAACTCTCACTGGAAAAACCATTACCCTTGAAGTCGAGGCCTCAGAC 341466 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || ||||||||||| || ||||| || || ||| Sbjct 341467 ACTATAGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAACAA 341526 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || ||||| || || |||||| | ||||||||||| || ||| ||||||| ||| Sbjct 341527 CGTCTAATCTTTGCTGGTAAACAGTTGGAAGATGGAAGAACCCTTTCCGATTACAAC 341583 Score = 134 bits (148), Expect = 3e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||||||||| || ||||| || || ||||| || ||||| || || ||| Sbjct 341906 AAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAACAACGTCTAATCTTTGCTGGTAAA 341965 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||| | ||||||||||| |||||| | ||||| ||| |||| |||||||| ||||| ||| Sbjct 341966 CAGTTGGAAGATGGAAGAACTCTTTCTGATTACAACATCCAGAAAGAATCCACACTACAT 342025 Query 178125 CTTGTTTTGAGACT 178138 | ||||||||||| Sbjct 342026 TTAGTTTTGAGACT 342039 >seq239 Length=229837 Score = 143 bits (158), Expect = 6e-29 Identities = 144/187 (77%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||||||||| || || || || ||||| ||||||||| ||| ||| Sbjct 6310 CAGATATTCGTGAAAACTCTCACGGGTAAGACCATTACCCTTGAGGTGGAAGCCTCCGAC 6251 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || |||||||| ||||| || || ||||| ||||| ||||| Sbjct 6250 ACTATTGAAAATGTGAAGGCCAAGATTCAAGACAAGGAGGGGATCCCACCGGATCAGCAG 6191 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || |||||| | ||||| | || || || || Sbjct 6190 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTCTCTCTGACTACAATATC 6131 Query 178104 CAAAAAG 178110 || |||| Sbjct 6130 CAGAAAG 6124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203630088083864