Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudomyrmex_20gracilis_20[refseq_20GCF_5F002006095.1_202017-02-23] 6,556 sequences; 282,776,121 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq160 109 5e-19 seq239 96.9 3e-15 >seq160 Length=383029 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || |||||||| | |||| ||| || || || ||||| ||||| ||||| || Sbjct 144420 GCCACCACGTAGACGAAGTACCAAATGTAGAGTTGATTCTTTCTGGATGTTGTAGTCCGA 144361 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| ||||||||||| |||||||| |||| | ||| || |||| || Sbjct 144360 CAGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGG 144301 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCA 41813 || | || || ||| || |||| |||| || | | ||||| || || | Sbjct 144300 AATTCCTTCTTTATCC-TGTATTTTGGCTTTGACATTCTCGATGGTGTCCGACGCTTCGA 144242 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || |||||||| || || ||||| ||||| || ||||| Sbjct 144241 CCTCCAGAGTGATGGTTTTACCTGTGAGTGTCTTGACGAATATTTGCAT 144193 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || | |||||| ||| || ||||| || || ||||| || Sbjct 144647 CCACCACGAAGTCGCAGAACTAAATGCAGAGTGGATTCTTTCTGTATATTGTAGTCCGAC 144588 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||||||||| |||||||| |||| | ||||||||||| ||| Sbjct 144587 AGTGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCTCTGTTGGTCCGGAGGA 144528 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | | || || ||| || |||| || | ||| | | |||||| || ||| || Sbjct 144527 ATTCCTTCTTTATCC-TGTATTTTGGCCTTGACGTTCTCAATAGTGTCAGACGCCTCGAC 144469 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || ||||| || || || || || || || ||||||||| Sbjct 144468 TTCCAATGTGATTGTTTTGCCGGTGAGGGTTTTGACAAAGATCTGCATG 144420 Score = 100 bits (110), Expect = 3e-16 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||| ||||| ||||| || | ||||| |||| ||||||||||| |||||||| Sbjct 144155 TCCTTCTGGATGTTGTAGTCCGACAATGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAG 144096 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-A 41790 |||| | || || || | |||| | ||||| ||| ||| |||| || | |||| Sbjct 144095 ATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCC-TGAATTTTGGCCTTAACGTT 144037 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | |||||| || ||| || |||| || || ||||| || || || || || || Sbjct 144036 CTCAATTGTGTCGGACGCCTCGACTTCCANTGTGATTGTTTTNCCGGTNAGAGTTTTGAC 143977 Query 41851 GAAAATCTGCAT 41862 || |||||||| Sbjct 143976 NAAGATCTGCAT 143965 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || |||||||| | |||| ||||| ||| |||||||| ||||| || || || Sbjct 143052 GCCACCACGTAGACGAAGAACCAAATGCAAAGTGGATTCCTTCTGGATGTTGTAATCTGA 142993 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| |||| |||||||| || || || || |||| | ||| ||||| | || Sbjct 142992 CAATGTGCGTCCGTCTTCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGTGG 142933 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGA-CACA---GTGTCGCTCGACT 41810 || | ||||| || |||||| ||| |||| | || || || || || Sbjct 142932 AATTCCTTCCTTATCTTGGATTTTAGCCTT----GACGTTCTCAATCGTATCAGACGCCT 142877 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || |||| || || || || || || || |||||||| |||||||||||| Sbjct 142876 CTACTTCCAAGGTAATGGTCTTGCCAGTAAGTGTCTTTACAAAAATCTGCATG 142824 >seq239 Length=229837 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| || || ||||| ||||| || || | || || ||||||||||||||||| || Sbjct 6126 TTCTGGATATTGTAGTCAGAGAGAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATG 6185 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGA 41793 || ||||| || |||| || | | |||||||| | ||| | || | ||||| Sbjct 6186 AGACGCTGCTGATCCGGTGGGATCCCCTCCTTGT-CTTGAATCTTGGCCTTCACATTTTC 6244 Query 41794 CACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | ||||||| | |||||||| | || || || |||||||| || || || ||||| Sbjct 6245 AATAGTGTCGGAGGCTTCCACCTCAAGGGTAATGGTCTTACCCGTGAGAGTTTTCACGAA 6304 Query 41854 AATCTGCATG 41863 ||||||||| Sbjct 6305 TATCTGCATG 6314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462266114187200