Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq4881 116 8e-21
seq38461 93.3 9e-14
seq8974 93.3 9e-14
seq28231 91.5 3e-13
seq6386 91.5 3e-13
seq731 91.5 3e-13
seq570 91.5 3e-13
seq1736 89.7 1e-12
seq1658 89.7 1e-12
seq989 89.7 1e-12
seq602 89.7 1e-12
seq501 89.7 1e-12
seq257 87.8 4e-12
seq1824 86.0 1e-11
>seq4881
Length=46776
Score = 116 bits (128), Expect = 8e-21
Identities = 361/554 (65%), Gaps = 6/554 (1%)
Strand=Plus/Minus
Query 281481 AACCCCTTGTACCACGGTTTCATTTCGACGAGGTCCTCTCCAGATATCAAACGCTTCACG 281540
|| |||||| |||| || ||||| | || ||||| || |||| ||| | |
Sbjct 37446 AAGCCCTTGAACCAGGGCTTCATCACCTTGACCTCCTCGCCGCGCATCATCCGCCGAATG 37387
Query 281541 TTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATA 281600
||||| || ||||| ||||| || ||||||| || || ||| ||||| |||||
Sbjct 37386 TTGTCGACAATGTCCCGTGGATTGTAGTTGGGAATCTTGGTGCTCCACCCGGTGCCAATG 37327
Query 281601 CCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATT 281660
|| | || || |||| | | || || || || ||||| | || || |||||
Sbjct 37326 CCCTCGGCGCCGTTGACCAGCACCATGGGAATGATGGGCACATAGTACTCGGGCTCAATC 37267
Query 281661 TTATCACCATCATCATACAAATACTTCAGAAGGTTATCATCTGTATCGACGAAA-ACCTG 281719
|| ||||| |||| || || || || ||||| | ||| ||| | ||
Sbjct 37266 TTGAGGTTGTCATCGTACAGGTAGTTTAGCAGCGGCTCATCCAGCT-GACTAAACAGCTT 37208
Query 281720 TCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACC 281779
|| | || | || | || ||||| || | || || ||| ||| || || ||
Sbjct 37207 CCGGGCGAGCGGACTGAGCATGGTAAAGATGTAACGGGCGCTGGCGGCGTCCTTGCCGCC 37148
Query 281780 CTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGAC 281839
|||||| | | |||||||| || |||| || | ||||||||| ||||| |||||
Sbjct 37147 CTGCAGGCGGGTGCCAAACTGGCCAATGGGCATCAGCAGGTTAATGTTGTTGCTGCCGAC 37088
Query 281840 GTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGC 281899
| ||||| |||||||||| ||| ||| | ||||| ||||| |||||||| |||||
Sbjct 37087 AAAGTCCTGCGCCAGGTTGATGATGGTCGACATGAGCGAGACCTCGCCGTGGTGGTAGGC 37028
Query 281900 GCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCACGT--CTGATGTCAAGTTG 281957
|||||| ||| | || | || | ||| || ||||| || | | |||| ||||
Sbjct 37027 GCTGTGCTCGCCCACCGAGCCGGCCAGCTGCGCCACCTTGACCTCGCGCTTGTC--GTTG 36970
Query 281958 CGTTTGAAAGCGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGAC 282017
|| ||||| | | | | || || || || ||||||| || || || | |||
Sbjct 36969 CGCTTGAAGCAGGTAAAGAGCACCTTGCGCTGGCCCGGCTTGAGCCCGTCCACCAGCGAC 36910
Query 282018 GGAATGCTGCGTTC 282031
|||||| ||| ||
Sbjct 36909 GGAATGGAGCGCTC 36896
>seq38461
Length=3019
Score = 93.3 bits (102), Expect = 9e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765
|| |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct 860 GCATGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 801
Query 165766 GAGCCCCACGATGGGC 165781
|||||||||| |||||
Sbjct 800 GAGCCCCACGTTGGGC 785
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 2442 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2383
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 2382 CCCACGTTGGGC 2371
>seq8974
Length=25430
Score = 93.3 bits (102), Expect = 9e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765
|| |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct 9851 GCATGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 9792
Query 165766 GAGCCCCACGATGGGC 165781
|||||||||| |||||
Sbjct 9791 GAGCCCCACGTTGGGC 9776
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 11373 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 11314
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 11313 CCCACGTTGGGC 11302
>seq28231
Length=4947
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 4330 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 4389
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 4390 CCCCACGTTGGGC 4402
>seq6386
Length=36377
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 31259 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 31318
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 31319 CCCCACGTTGGGC 31331
>seq731
Length=200492
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 116069 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 116010
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 116009 CCCCACGTTGGGC 115997
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||| | ||||||||||||||||
Sbjct 108146 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATTTCAGGGTCGTGGGTTCGAGC 108205
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 108206 CCCACGTTGGGC 108217
>seq570
Length=230617
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 207637 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 207696
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 207697 CCCCACGTTGGGC 207709
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 214560 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 214619
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 214620 CCCCACGTTGGGC 214632
>seq1736
Length=109086
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 12906 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 12965
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 12966 CCCACGTTGGGC 12977
>seq1658
Length=113207
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 106182 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 106123
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 106122 CCCACGTTGGGC 106111
>seq989
Length=166514
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 87450 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 87391
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 87390 CCCACGTTGGGC 87379
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 161934 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 161875
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 161874 CCCACGTTGGGC 161863
>seq602
Length=222404
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 7525 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 7584
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 7585 CCCACGTTGGGC 7596
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 8566 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 8625
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 8626 CCCACGTTGGGC 8637
>seq501
Length=246106
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 219720 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 219661
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 219660 CCCACGTTGGGC 219649
>seq257
Length=353820
Score = 87.8 bits (96), Expect = 4e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||| ||||| ||||| ||||||| |||||||||||||||
Sbjct 109334 TGCCCGGCTAGCTCAGTCGGGAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 109275
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 109274 CCCCACGTTGGGC 109262
>seq1824
Length=104847
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||| ||
Sbjct 41831 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTGC 41890
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 41891 CCCACGTTGGGC 41902
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||| ||
Sbjct 41914 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTGC 41973
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 41974 CCCACGTTGGGC 41985
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||| ||
Sbjct 41997 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTGC 42056
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 42057 CCCACGTTGGGC 42068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1056649329422100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |