Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4881 116 8e-21 seq38461 93.3 9e-14 seq8974 93.3 9e-14 seq28231 91.5 3e-13 seq6386 91.5 3e-13 seq731 91.5 3e-13 seq570 91.5 3e-13 seq1736 89.7 1e-12 seq1658 89.7 1e-12 seq989 89.7 1e-12 seq602 89.7 1e-12 seq501 89.7 1e-12 seq257 87.8 4e-12 seq1824 86.0 1e-11 >seq4881 Length=46776 Score = 116 bits (128), Expect = 8e-21 Identities = 361/554 (65%), Gaps = 6/554 (1%) Strand=Plus/Minus Query 281481 AACCCCTTGTACCACGGTTTCATTTCGACGAGGTCCTCTCCAGATATCAAACGCTTCACG 281540 || |||||| |||| || ||||| | || ||||| || |||| ||| | | Sbjct 37446 AAGCCCTTGAACCAGGGCTTCATCACCTTGACCTCCTCGCCGCGCATCATCCGCCGAATG 37387 Query 281541 TTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATA 281600 ||||| || ||||| ||||| || ||||||| || || ||| ||||| ||||| Sbjct 37386 TTGTCGACAATGTCCCGTGGATTGTAGTTGGGAATCTTGGTGCTCCACCCGGTGCCAATG 37327 Query 281601 CCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATT 281660 || | || || |||| | | || || || || ||||| | || || ||||| Sbjct 37326 CCCTCGGCGCCGTTGACCAGCACCATGGGAATGATGGGCACATAGTACTCGGGCTCAATC 37267 Query 281661 TTATCACCATCATCATACAAATACTTCAGAAGGTTATCATCTGTATCGACGAAA-ACCTG 281719 || ||||| |||| || || || || ||||| | ||| ||| | || Sbjct 37266 TTGAGGTTGTCATCGTACAGGTAGTTTAGCAGCGGCTCATCCAGCT-GACTAAACAGCTT 37208 Query 281720 TCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACC 281779 || | || | || | || ||||| || | || || ||| ||| || || || Sbjct 37207 CCGGGCGAGCGGACTGAGCATGGTAAAGATGTAACGGGCGCTGGCGGCGTCCTTGCCGCC 37148 Query 281780 CTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGAC 281839 |||||| | | |||||||| || |||| || | ||||||||| ||||| ||||| Sbjct 37147 CTGCAGGCGGGTGCCAAACTGGCCAATGGGCATCAGCAGGTTAATGTTGTTGCTGCCGAC 37088 Query 281840 GTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGC 281899 | ||||| |||||||||| ||| ||| | ||||| ||||| |||||||| ||||| Sbjct 37087 AAAGTCCTGCGCCAGGTTGATGATGGTCGACATGAGCGAGACCTCGCCGTGGTGGTAGGC 37028 Query 281900 GCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCACGT--CTGATGTCAAGTTG 281957 |||||| ||| | || | || | ||| || ||||| || | | |||| |||| Sbjct 37027 GCTGTGCTCGCCCACCGAGCCGGCCAGCTGCGCCACCTTGACCTCGCGCTTGTC--GTTG 36970 Query 281958 CGTTTGAAAGCGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGAC 282017 || ||||| | | | | || || || || ||||||| || || || | ||| Sbjct 36969 CGCTTGAAGCAGGTAAAGAGCACCTTGCGCTGGCCCGGCTTGAGCCCGTCCACCAGCGAC 36910 Query 282018 GGAATGCTGCGTTC 282031 |||||| ||| || Sbjct 36909 GGAATGGAGCGCTC 36896 >seq38461 Length=3019 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 || |||||| ||||||||||||||||||| ||||| ||||||| |||||||||||| Sbjct 860 GCATGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 801 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 800 GAGCCCCACGTTGGGC 785 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 2442 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2383 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2382 CCCACGTTGGGC 2371 >seq8974 Length=25430 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 || |||||| ||||||||||||||||||| ||||| ||||||| |||||||||||| Sbjct 9851 GCATGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 9792 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 9791 GAGCCCCACGTTGGGC 9776 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 11373 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 11314 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 11313 CCCACGTTGGGC 11302 >seq28231 Length=4947 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 4330 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 4389 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 4390 CCCCACGTTGGGC 4402 >seq6386 Length=36377 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 31259 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 31318 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 31319 CCCCACGTTGGGC 31331 >seq731 Length=200492 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 116069 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 116010 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 116009 CCCCACGTTGGGC 115997 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||| | |||||||||||||||| Sbjct 108146 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATTTCAGGGTCGTGGGTTCGAGC 108205 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 108206 CCCACGTTGGGC 108217 >seq570 Length=230617 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 207637 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 207696 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 207697 CCCCACGTTGGGC 207709 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 214560 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 214619 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 214620 CCCCACGTTGGGC 214632 >seq1736 Length=109086 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 12906 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 12965 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12966 CCCACGTTGGGC 12977 >seq1658 Length=113207 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 106182 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 106123 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 106122 CCCACGTTGGGC 106111 >seq989 Length=166514 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 87450 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 87391 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 87390 CCCACGTTGGGC 87379 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 161934 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 161875 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 161874 CCCACGTTGGGC 161863 >seq602 Length=222404 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 7525 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 7584 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7585 CCCACGTTGGGC 7596 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 8566 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 8625 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8626 CCCACGTTGGGC 8637 >seq501 Length=246106 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 219720 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 219661 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 219660 CCCACGTTGGGC 219649 >seq257 Length=353820 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||| ||||| ||||| ||||||| ||||||||||||||| Sbjct 109334 TGCCCGGCTAGCTCAGTCGGGAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 109275 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 109274 CCCCACGTTGGGC 109262 >seq1824 Length=104847 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||| || Sbjct 41831 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTGC 41890 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 41891 CCCACGTTGGGC 41902 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||| || Sbjct 41914 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTGC 41973 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 41974 CCCACGTTGGGC 41985 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||| || Sbjct 41997 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTGC 42056 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 42057 CCCACGTTGGGC 42068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056649329422100