Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq22 205 1e-47
seq40302 120 3e-22
seq180 114 1e-20
seq59797 87.8 2e-12
>seq22
Length=933496
Score = 205 bits (226), Expect = 1e-47
Identities = 467/698 (67%), Gaps = 6/698 (1%)
Strand=Plus/Minus
Query 16778 CCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAG 16837
||||| ||| | | || | ||| || |||||||| ||||| | |||||| || |||
Sbjct 329819 CCCAGCTCGACCAGCAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAA 329760
Query 16838 TTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACC 16897
||||| || || | | || || | || || || || ||| ||| || || |||
Sbjct 329759 TTCATGCCAATCAAATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACA 329700
Query 16898 GCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957
||||| ||| || | || || ||| || | || | || |||| |||
Sbjct 329699 GCTTCAGCAATGATTTCAATAATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAAC 329640
Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017
||||| || || ||||||||||||||||| ||||| || || || || ||||| |||
Sbjct 329639 ATCAGGCAAGCAAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAAT 329580
Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077
||||| || ||||| || |||||||| | |||||| || | || || ||| |
Sbjct 329579 GTCAAACCAGGCATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTA 329520
Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137
||||| || || || || | ||||| || |||| |||||| | | | || |||
Sbjct 329519 AAGAAAATGCCTTCAACCGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTC 329460
Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197
|||||| | | |||| || || || |||| | | |||||| || ||
Sbjct 329459 GATGAAATCCACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATA 329400
Query 17198 GCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257
|| || || || | || ||| || || | ||||| ||||| || | || ||||
Sbjct 329399 GCATTGAACAAGTAATCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTG 329340
Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317
|||||||| || || | ||||||||||| || |||||||| || ||||| || || ||
Sbjct 329339 TACATTTCAGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCT 329280
Query 17318 GCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTC 17377
| ||||||||||| | ||| ||||| ||| ||||| ||||| || || |||
Sbjct 329279 GTGATTTGAACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAG 329220
Query 17378 GCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGT--CCGGTGTAAGAACGC 17435
||||| || || ||||| | ||| |||||||| ||| | ||||| || ||||
Sbjct 329219 GCGGCAAAGAATGCCAAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTG--AG-ACGC 329163
Query 17436 G-CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTC 17472
| ||| || | | ||||||||| | || || |||||
Sbjct 329162 GCCCAATCATCCATATCTTTGGAAAGGTCAACCTCTTC 329125
>seq40302
Length=2817
Score = 120 bits (132), Expect = 3e-22
Identities = 292/439 (67%), Gaps = 9/439 (2%)
Strand=Plus/Plus
Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020
||||| || || ||||| || | |||||||| | |||||| || || || || |||
Sbjct 2229 AGACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTC 2288
Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080
| || |||||| || || ||||| | |||||| || ||| || || || |||
Sbjct 2289 AGGCCCGGCATCAGGCCGCGCTTCTTCAGCCAAAAGATGCTGGCAAAGGAGCCGCTGAAG 2348
Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140
|| || ||||| |||| || || |||| | || ||||| | || ||| | || |
Sbjct 2349 AAGATGCCCTCCACGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCG 2408
Query 17141 -CGAA--TCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197
|| |||| | |||||| || || | | | ||| |||||| | |||
Sbjct 2409 GCGGCCGTCCAGGCCATGGCCCACTTCGCCTTCTTCGCGACGCAGGGCATCGTCTGGATG 2468
Query 17198 GCCTTAAATAATTTCTCTTTTTCCTGTA---GGTCGATTATATACGTATCGATGAGTAGG 17254
|| || || | | ||| ||| | ||||| | || || || | ||| || |||
Sbjct 2469 GCGTTGAAGAGGTACTCGCG---CTGGACGCGGTCGCTGATGTAGGTGTTGATCAGCAGG 2525
Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314
|||||| || ||||| | |||||| ||||| ||||| || ||||| ||||| |||||
Sbjct 2526 GAGTACATCTCCGAGTGGACGTTCTCGATGGCAATCTGGAAGCCGTAGAAGCAACGGGCC 2585
Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374
|| | | || || | ||| || ||||| || || || || ||||||||||||
Sbjct 2586 TCGGTGACGGTCACCTCGCGGATGAAGCGCTCCGCGAGGTTCTCATTGACGATGCCGTCG 2645
Query 17375 CTCGCGGCGAAAAACGCCA 17393
|| |||||||| || ||||
Sbjct 2646 CTGGCGGCGAAGAAGGCCA 2664
>seq180
Length=417715
Score = 114 bits (126), Expect = 1e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920
|| || || ||||| |||||| ||||||||| |||||| || || |||||||||
Sbjct 110479 CCTACATAGCCGTTTGGATCCCGTCCATCTAAACTGTATTTGTCATTCAAGTAGATAGCA 110420
Query 119921 ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACATA 119980
| ||| || ||| || || || |||||| ||||| ||||| |||||||||||
Sbjct 110419 ATTTCTAAGGCTTGTTCCGGCGTAGCGGCCCATTCAAGTATCTTTTTTGCCCAGTACATG 110360
Query 119981 CGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAAG 120040
|||| | ||||||||||| |||||| ||| ||||| ||||| || ||||| |
Sbjct 110359 CGTAGAAAACCATGCATTTTGCCTTCATTTGCCAATTGAACCTGTGCCGCATTCCAAAGA 110300
Query 120041 GGATCGTGTGTACGGGCGTGTTCTAA 120066
||||||||| |||| || || ||
Sbjct 110299 TCATCGTGTGTGTGGGCCTGCTCGAA 110274
>seq59797
Length=1646
Score = 87.8 bits (96), Expect = 2e-12
Identities = 169/246 (69%), Gaps = 5/246 (2%)
Strand=Plus/Minus
Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATT 17323
||||||||||| |||||||| ||||| || ||||| || |||| ||||| || |
Sbjct 1322 TCGGAGTGTATATTCTCCATCATAATCTGGAAACCGTAGAAACATCTTGCTTCTGCGAGC 1263
Query 17324 TGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383
|| || || | |||||| ||| ||| || || || || || ||||| ||||||
Sbjct 1262 TGTACCTCGGAGGAGAATCTTTCGAGTAGGTTCTCATTGACAATACCGTCAGATGCGGCG 1203
Query 17384 AAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCC-GGTGTA---AGAACGCGCCA 17439
|| || || |||| ||| ||||||| | || || ||| || || | | ||||
Sbjct 1202 AAGAATGCTAATACATGACTAATGAAGTGCTTCTCATCCTTGTTTATCTTGTTC-TGCCA 1144
Query 17440 GTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTT 17499
|||| | | ||| || || | |||| |||||| | ||||| ||| ||| |||| ||
Sbjct 1143 GTCCGTGATATCCTTCGACAAGTCCATTTCTTCTGCAGTCCAGAAAGAAGCTTCTGCTTT 1084
Query 17500 TTTATA 17505
|| ||
Sbjct 1083 CTTGTA 1078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 516984904035600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |