Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq22 205 1e-47 seq40302 120 3e-22 seq180 114 1e-20 seq59797 87.8 2e-12 >seq22 Length=933496 Score = 205 bits (226), Expect = 1e-47 Identities = 467/698 (67%), Gaps = 6/698 (1%) Strand=Plus/Minus Query 16778 CCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAG 16837 ||||| ||| | | || | ||| || |||||||| ||||| | |||||| || ||| Sbjct 329819 CCCAGCTCGACCAGCAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAA 329760 Query 16838 TTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACC 16897 ||||| || || | | || || | || || || || ||| ||| || || ||| Sbjct 329759 TTCATGCCAATCAAATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACA 329700 Query 16898 GCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 ||||| ||| || | || || ||| || | || | || |||| ||| Sbjct 329699 GCTTCAGCAATGATTTCAATAATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAAC 329640 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 ||||| || || ||||||||||||||||| ||||| || || || || ||||| ||| Sbjct 329639 ATCAGGCAAGCAAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAAT 329580 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 ||||| || ||||| || |||||||| | |||||| || | || || ||| | Sbjct 329579 GTCAAACCAGGCATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTA 329520 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 ||||| || || || || | ||||| || |||| |||||| | | | || ||| Sbjct 329519 AAGAAAATGCCTTCAACCGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTC 329460 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 |||||| | | |||| || || || |||| | | |||||| || || Sbjct 329459 GATGAAATCCACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATA 329400 Query 17198 GCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 || || || || | || ||| || || | ||||| ||||| || | || |||| Sbjct 329399 GCATTGAACAAGTAATCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTG 329340 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 |||||||| || || | ||||||||||| || |||||||| || ||||| || || || Sbjct 329339 TACATTTCAGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCT 329280 Query 17318 GCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTC 17377 | ||||||||||| | ||| ||||| ||| ||||| ||||| || || ||| Sbjct 329279 GTGATTTGAACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAG 329220 Query 17378 GCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGT--CCGGTGTAAGAACGC 17435 ||||| || || ||||| | ||| |||||||| ||| | ||||| || |||| Sbjct 329219 GCGGCAAAGAATGCCAAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTG--AG-ACGC 329163 Query 17436 G-CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTC 17472 | ||| || | | ||||||||| | || || ||||| Sbjct 329162 GCCCAATCATCCATATCTTTGGAAAGGTCAACCTCTTC 329125 >seq40302 Length=2817 Score = 120 bits (132), Expect = 3e-22 Identities = 292/439 (67%), Gaps = 9/439 (2%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 ||||| || || ||||| || | |||||||| | |||||| || || || || ||| Sbjct 2229 AGACAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTC 2288 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || |||||| || || ||||| | |||||| || ||| || || || ||| Sbjct 2289 AGGCCCGGCATCAGGCCGCGCTTCTTCAGCCAAAAGATGCTGGCAAAGGAGCCGCTGAAG 2348 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || ||||| |||| || || |||| | || ||||| | || ||| | || | Sbjct 2349 AAGATGCCCTCCACGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCG 2408 Query 17141 -CGAA--TCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 || |||| | |||||| || || | | | ||| |||||| | ||| Sbjct 2409 GCGGCCGTCCAGGCCATGGCCCACTTCGCCTTCTTCGCGACGCAGGGCATCGTCTGGATG 2468 Query 17198 GCCTTAAATAATTTCTCTTTTTCCTGTA---GGTCGATTATATACGTATCGATGAGTAGG 17254 || || || | | ||| ||| | ||||| | || || || | ||| || ||| Sbjct 2469 GCGTTGAAGAGGTACTCGCG---CTGGACGCGGTCGCTGATGTAGGTGTTGATCAGCAGG 2525 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| || ||||| | |||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 2526 GAGTACATCTCCGAGTGGACGTTCTCGATGGCAATCTGGAAGCCGTAGAAGCAACGGGCC 2585 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || | ||| || ||||| || || || || |||||||||||| Sbjct 2586 TCGGTGACGGTCACCTCGCGGATGAAGCGCTCCGCGAGGTTCTCATTGACGATGCCGTCG 2645 Query 17375 CTCGCGGCGAAAAACGCCA 17393 || |||||||| || |||| Sbjct 2646 CTGGCGGCGAAGAAGGCCA 2664 >seq180 Length=417715 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920 || || || ||||| |||||| ||||||||| |||||| || || ||||||||| Sbjct 110479 CCTACATAGCCGTTTGGATCCCGTCCATCTAAACTGTATTTGTCATTCAAGTAGATAGCA 110420 Query 119921 ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACATA 119980 | ||| || ||| || || || |||||| ||||| ||||| ||||||||||| Sbjct 110419 ATTTCTAAGGCTTGTTCCGGCGTAGCGGCCCATTCAAGTATCTTTTTTGCCCAGTACATG 110360 Query 119981 CGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAAG 120040 |||| | ||||||||||| |||||| ||| ||||| ||||| || ||||| | Sbjct 110359 CGTAGAAAACCATGCATTTTGCCTTCATTTGCCAATTGAACCTGTGCCGCATTCCAAAGA 110300 Query 120041 GGATCGTGTGTACGGGCGTGTTCTAA 120066 ||||||||| |||| || || || Sbjct 110299 TCATCGTGTGTGTGGGCCTGCTCGAA 110274 >seq59797 Length=1646 Score = 87.8 bits (96), Expect = 2e-12 Identities = 169/246 (69%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATT 17323 ||||||||||| |||||||| ||||| || ||||| || |||| ||||| || | Sbjct 1322 TCGGAGTGTATATTCTCCATCATAATCTGGAAACCGTAGAAACATCTTGCTTCTGCGAGC 1263 Query 17324 TGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383 || || || | |||||| ||| ||| || || || || || ||||| |||||| Sbjct 1262 TGTACCTCGGAGGAGAATCTTTCGAGTAGGTTCTCATTGACAATACCGTCAGATGCGGCG 1203 Query 17384 AAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCC-GGTGTA---AGAACGCGCCA 17439 || || || |||| ||| ||||||| | || || ||| || || | | |||| Sbjct 1202 AAGAATGCTAATACATGACTAATGAAGTGCTTCTCATCCTTGTTTATCTTGTTC-TGCCA 1144 Query 17440 GTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTT 17499 |||| | | ||| || || | |||| |||||| | ||||| ||| ||| |||| || Sbjct 1143 GTCCGTGATATCCTTCGACAAGTCCATTTCTTCTGCAGTCCAGAAAGAAGCTTCTGCTTT 1084 Query 17500 TTTATA 17505 || || Sbjct 1083 CTTGTA 1078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516984904035600